Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,139,551 – 10,139,671 |
Length | 120 |
Max. P | 0.536967 |
Location | 10,139,551 – 10,139,671 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.29 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -21.20 |
Energy contribution | -21.88 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.21 |
Mean z-score | -1.74 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10139551 120 + 20766785 GUACGAAGUGGCAGCACCGUUGUGCUUCACUGCAAAUGCUGCCUGCUGCGAAACAUUCAGUUUGAAUGUUUGGUCGUUACAUUUUGAUAUUUAUUUAUCUGUACACAGAUAUUAACAUAA ...(((((((((((((...((((........)))).))))))).((.((.((((((((.....)))))))).)).))...)))))).........((((((....))))))......... ( -35.30) >DroSec_CAF1 4849 120 + 1 GUACGAUGUGGCAGCUCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGUAAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUACCUGUACACAAAUAUUAACAUAA ((((((((((((((((...((((........)))).))))))).))....((((((((.....)))))))).)))).)))...(((((((((.(.((....)).).)))))))))..... ( -30.30) >DroSim_CAF1 4660 120 + 1 GUACGAGGUGGCAGCGCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGUAAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUAUCUGUACACAAAUAUUAACAUAA (((((.(((((.(((((....)))))))))).)(((((..((..(((...((((((((.....))))))))))).))..))))).((((......)))).))))................ ( -29.90) >DroEre_CAF1 5335 116 + 1 GAACGAAGUGGCAGCGCCGUUGUGUUCUAUUGCACAAGCAGACCGCUGCGAAACUUUCAGCUUAAAUGUUUGGUCGUUACUUUUUAAUAUU----UAUCUGUACACAAAUAUUAACAUAA .......(((((((((.(.((((((......))))))...)..))))))........(((..((((((((.(((....)))....))))))----)).)))..))).............. ( -24.90) >DroYak_CAF1 4623 116 + 1 GUACGAAGUGGCAGCGCCGCAGUGUUCUAUUGCAAAAGCUGCCUGCUGCGAAGCUUUCAGUUUGAAUGUUUGGUCGUUACUUUUUGAUAUU----UAUCUGUACACAAAUAUUAACAUAA (((((((((((((((...((((((...))))))....)))))).((.((.((((.(((.....))).)))).)).)).)))))..(((...----.))).))))................ ( -29.60) >consensus GUACGAAGUGGCAGCGCCGUUGUGCUCCACUGCAAAAGCUGCCUGCUGCGAAACAUUCAGCUUGAAUGUUUGGUCGUUACUUUUUGAUAUUUAUUUAUCUGUACACAAAUAUUAACAUAA (((((((((((((((((.((..(((......)))...)).)..)))))).((((((((.....))))))))......))))))..((((......)))).))))................ (-21.20 = -21.88 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006