Locus 2920

Sequence ID 2R_DroMel_CAF1
Location 10,136,468 – 10,136,570
Length 102
Max. P 0.587327
window4814

overview

Window 4

Location 10,136,468 – 10,136,570
Length 102
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 83.25
Mean single sequence MFE -15.98
Consensus MFE -11.27
Energy contribution -10.78
Covariance contribution -0.50
Combinations/Pair 1.20
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.587327
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10136468 102 - 20766785
UUUUCUUUCUUUUCAAAUGUAAGACCACAUGGCCUUGCAUUAGAGUACACAUUUUACGGAA--UUCUUUCAAACACACCACAGCUCGCCAAGAAAUUUUCAAUU
.....((((((..(.((((((((.((....)).)))))))).((((............(((--....)))............)))))..))))))......... ( -17.75)
>DroSec_CAF1 1785 103 - 1
UUUUCUUUGUUUUAAAAUGUAAGACCACAGGGCCUUGCAACAAAGUACACAUUUUAAAGUU-UUUCUUUUAAACACACUACUACUCGCCAAGAAAUUUUCAAUU
.((((((.((.......((((((.((....)).))))))....((((.....(((((((..-....))))))).....))))....)).))))))......... ( -14.70)
>DroSim_CAF1 1786 103 - 1
UUUUCUUUGUUUUAAAAUGCAUGACCACAUGGCCUUGCAUUAGAGUACACAUUUUAGGGUU-UUUCUUUCAAACACACCACCACUCGCCAAGAAAUUUUCAAUU
.((((((.((.....((((((.(.((....)).).)))))).((((...(......)(((.-..............)))...)))))).))))))......... ( -15.06)
>DroYak_CAF1 1795 102 - 1
UUUUCUUUGUUUUAAAUUGUGAGACCACAUGGCCUCGCACUGAAGUACAAAUUUUAAAAAUUUUUGCUCCAAACA--CUACUGCUUUCCAAGAAAUUUUCAAUU
.((((((..........((((((.((....)).)))))).((.((((.(((((.....))))).)))).))....--............))))))......... ( -16.40)
>consensus
UUUUCUUUGUUUUAAAAUGUAAGACCACAUGGCCUUGCAUUAAAGUACACAUUUUAAAGAU_UUUCUUUCAAACACACCACUACUCGCCAAGAAAUUUUCAAUU
.((((((..........((((((.((....)).)))))).((((((....)))))).................................))))))......... (-11.27 = -10.78 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:44 2006