Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,134,716 – 10,134,817 |
Length | 101 |
Max. P | 0.785375 |
Location | 10,134,716 – 10,134,817 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -29.27 |
Consensus MFE | -23.16 |
Energy contribution | -22.42 |
Covariance contribution | -0.74 |
Combinations/Pair | 1.45 |
Mean z-score | -1.72 |
Structure conservation index | 0.79 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10134716 101 + 20766785 UUCGUUCAUAAAACACUGUUCCCUGAAGUAUUUUGAGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU--GGUAUAGU ..............(((((.(((((.....(((((.((((((((((.(((((........))))))))))..))))).)))))..))).....--)).))))) ( -27.80) >DroSec_CAF1 22 101 + 1 UUCGUUCAUAAAGCACUGUUCCUUGAAGUACUUUGUGCGGUACAAGCAUCGCUUUUCUCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU--GGUAUAGU ..............(((((.((..(..((..(((((((((..((((((((((........)))))...))))))))))))))..))..)....--)).))))) ( -27.60) >DroSim_CAF1 22 101 + 1 UUCGUUCAUAAAGCACUGUUCCCUGAAGUACUUUGUCCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAGAAGGCAGCCUUU--GGUAUAGU ..............(((((.((..(..((..(((((.(((((((((.(((((........))))))))))..)))).)))))..))..)....--)).))))) ( -24.60) >DroEre_CAF1 23 101 + 1 UUCAUUCAUAAAGCAAAGUUCCCUGAAGUACUUUGUGCGGUACGCGCAUCGCUUUUCCCUGUGAUUGCGUUUGCCGCACAAAAGGCAGCCUUU--GCUAUAGU ...........(((((((((.(((.......(((((((((((.(((((((((........)))).))))).)))))))))))))).)).))))--)))..... ( -39.51) >DroYak_CAF1 22 101 + 1 UUCAUUCAUAAAGCAAUGUUCCCUGAAGUAUUUUGUGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGACAGCCUUU--GGUAUAGU ......................(..(((..((((((((((((((((.(((((........))))))))))..)))))))))))......))).--.)...... ( -29.30) >DroPer_CAF1 15298 103 + 1 GUGGCCCAAAAAUUGAUGUUCCUUGAAGUAUCUUCCACGAUGCUGGCACCGUCGCUCCCUAUGGUCCUGCCGACCACACAGGAGGCAGCCCGUCCGAGAUCGU (.(((.........((((..((....((((((......))))))))...))))((..(((.(((((.....)))))...)))..)).))))............ ( -26.80) >consensus UUCGUUCAUAAAGCAAUGUUCCCUGAAGUACUUUGUGCGGUACGAGCAUCGCUUUUCCCUGUGAUUUCGUUUGCCGCACAAAAGGCAGCCUUU__GGUAUAGU ...........................((..(((((((((((((((.(((((........))))))))))..))))))))))..))................. (-23.16 = -22.42 + -0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:43 2006