Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,130,131 – 10,130,240 |
Length | 109 |
Max. P | 0.605233 |
Location | 10,130,131 – 10,130,240 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.96 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -22.70 |
Energy contribution | -22.48 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.82 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605233 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10130131 109 - 20766785 -----------AGGCAGAAGCGGGAAAUAUUGUUGAGGAAAGCGACUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA -----------.(((...(((((......)))))........((((((((...(((((...(((((((...(((((((.(....)))))))).))))))))))))))))))))..))).. ( -32.10) >DroSec_CAF1 14276 109 - 1 -----------AGGCAGUAUCCGGAAAUAUUCUUGAAGAAAGCGAUUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA -----------.(((....((.(((.....))).))......((((((((...(((((...(((((((...(((((((.(....)))))))).))))))))))))))))))))..))).. ( -29.90) >DroSim_CAF1 14071 109 - 1 -----------AGGCAGUAUCCGGAAAUAUUCUUGAGGAAAGCGAUUCCCAACUUGCUGAGGAUUUUAAAUUGGCUGAAGAGAUUUUAGCCGCUGAAGUUGGUAAGGCAGUUGAAGCCAA -----------.(((....((.(((.....))).))((((.....))))(((((.(((...(((((((...(((((((((...))))))))).))))))).....))))))))..))).. ( -28.00) >DroEre_CAF1 14378 109 - 1 -----------AGGCAGUAUCGGGAAAUAUACUUGAGGAAAGCGACUCCCAGCUGGCUGAGGAUAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUCAGGUUGGUAAGGGAGUUGAAGCUAA -----------.(((....(((((.......)))))......((((((((.((..(((((((((.....)))((((((.(....))))))).)))).))..))..))))))))..))).. ( -35.40) >DroYak_CAF1 14016 109 - 1 -----------AGACAGUUUCGGGAAAUAUACUUGAGGAAAGCGACUCCCAGCUGGCUGAGGACAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCUAA -----------....((((((..........(((.....))).(((((((.((..(((..((.........(((((((.(....))))))))))..)))..))..))))))))))))).. ( -31.70) >DroAna_CAF1 13250 120 - 1 UCUUGAAGUGGGGGAGGUGACGGAAGACAUGCAGGAGGUAAGCGACUCCCAGCUCGCUGAAGACAUUAAGCUGGCCGAGGAGAUCUUGGCCGCCGAGGUCGGAAAGGGAGUUGAAGUAAC (((((..(((.....(....)......))).)))))......((((((((((((.(.((....)).).))))(((((((.....))))))).(((....)))...))))))))....... ( -39.50) >consensus ___________AGGCAGUAUCGGGAAAUAUUCUUGAGGAAAGCGACUCCCAACUUGCUGAGGAUAUUAAAUUGGCUGAAGAGAUCUUAGCCGCUGAGGUUGGUAAGGGAGUUGAAGCCAA ....................................((....((((((((.((..(((..((.........(((((((.......)))))))))..)))..))..))))))))...)).. (-22.70 = -22.48 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006