Locus 2914

Sequence ID 2R_DroMel_CAF1
Location 10,129,452 – 10,129,568
Length 116
Max. P 0.848925
window4804

overview

Window 4

Location 10,129,452 – 10,129,568
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -26.80
Consensus MFE -23.52
Energy contribution -23.48
Covariance contribution -0.04
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.88
SVM decision value 0.78
SVM RNA-class probability 0.848925
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10129452 116 + 20766785
UAUCUCUUUUUCCUUAUCUAUUGUUAUUAAAUCUUUGGCCAACUUGGAGACUGUCACUUUCUUUUCCAUCGGAGAGCGUUCGUGUGAGGAAUGACUUUCCGCUGGCGACCUUCCUA
.....................................((((...((((((............)))))).((((((((((((.......))))).))))))).)))).......... ( -23.80)
>DroSec_CAF1 13594 116 + 1
UAUCACUUUUUCCUUUUCUAUUGUUAUUAAAUCUUUGGCCAACUUGGAGACUGUCACUUUCUUUUCCAUCGGAGAGCGUUCUUGUGAGGAAUGACUUUCCGCUGGCGACCUUCCUA
.....................................((((...((((((............)))))).(((((((((((((.....)))))).))))))).)))).......... ( -25.20)
>DroSim_CAF1 13407 116 + 1
UAUCACUUUUUCCUUUUCUAUUGUUAUUAAAUCUUUGGCCAACUUGGAGACUGUCACUUUCUUUUCCAUGGGAGAGCGUUCUUGUGAGGAAUGACUUUCCGCUGGCGACCUUCCUA
.....................................((((.(.((((((............)))))).)((((((((((((.....)))))).))))))..)))).......... ( -24.40)
>DroEre_CAF1 13717 116 + 1
UUUCACUUGUUCCUUUUCUUUUGUUGAUAAGUCUUUGGCCAACUUGGAGACUGUCACUUUCUUUUCCACCGGAGAGCGUUCUUGUGAAGAAUGGCUUUCCGCUGGCGACCUACCAA
........................(((((.(((((..(.....)..)))))))))).........(((.(((((((((((((.....))))).)))))))).)))........... ( -30.30)
>DroYak_CAF1 13355 116 + 1
GUUCACUUUUUCCUUUUCUUUUUUUGAAAAGUCCUUAACCAACUUGGAGACUGUCAUUUUCUUUUCCACCGGAGAGCGUUCUUGUGAGGAAUGGCUUUCCGCUGGUGACCUUCCAA
............((((((.......)))))).............(((((...((((.........(((.(((((((((((((.....))))).)))))))).))))))).))))). ( -30.30)
>consensus
UAUCACUUUUUCCUUUUCUAUUGUUAUUAAAUCUUUGGCCAACUUGGAGACUGUCACUUUCUUUUCCAUCGGAGAGCGUUCUUGUGAGGAAUGACUUUCCGCUGGCGACCUUCCUA
.....................................((((...((((((............)))))).(((((((((((((.....)))))).))))))).)))).......... (-23.52 = -23.48 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:34 2006