| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 10,115,513 – 10,115,716 |
| Length | 203 |
| Max. P | 0.965764 |
| Location | 10,115,513 – 10,115,606 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 79.92 |
| Mean single sequence MFE | -28.18 |
| Consensus MFE | -17.33 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10115513 93 + 20766785 CUGCGCCUCGAUGAUGUACCCAGCGUCGAUUAGGCGCAGCUGUAACAUAAUUAUCUCACAUUCGUGAUCUGCAAUAGAGCAG--CUGUUAGCUGA------- ((((((((.(.((((((.....)))))).).))))))))...(((((........((((....)))).((((......))))--.))))).....------- ( -29.40) >DroPse_CAF1 5314 99 + 1 CUGCGCCUCAAUAAUGUAUCCAGCAUCGAUGAGUCGCAGUUGAAGCAUUAUAAUCUCACAUUCGUGAUCUUUAAGGA---AGUGUGGUUAGAUCCAUACAAU (((((.((((.(.((((.....)))).).)))).)))))((((((.((((..(........)..))))))))))...---.((((((......))))))... ( -26.30) >DroSec_CAF1 5143 95 + 1 CUGCGCUUCGAUGAUGUAGCCCGCGUCGAUUAGGCGCAGCUGUAACAUAAUUAUCUCACGUUCGUGAUCUGCAAUAGAGGAGCGCUGUUAGCCAU------- ..(((((((..((.(((((...(((((.....)))))..................((((....)))).))))).))..)))))))..........------- ( -30.10) >DroSim_CAF1 6253 95 + 1 CUGCGCUUCGAUGAUGUAGCCCGCGUCGAUUAGGCGCAGCUGUAACAUAAUUAUCUCACGUUCGUGAUCUGCAAUAGAGGAGCGCUGUUAGCCAA------- ..(((((((..((.(((((...(((((.....)))))..................((((....)))).))))).))..)))))))..........------- ( -30.10) >DroEre_CAF1 5109 93 + 1 CUGGGCCUCGAUGAUGUAGCCCGCAUCGAUUAGGCGCAGCUGCAGCAUGAUUAUCUCACAUUCGUGAUCUACAAUAGAGGAC--CAAUUAGCAAC------- .(((.((((.(((.((((((..((..(.....)..)).)))))).))).......((((....)))).........)))).)--)).........------- ( -26.00) >DroYak_CAF1 4995 93 + 1 CUGGGCCUCGAUUAUGUAGCCCGCGUCGAUUAGGCGCAGCUGUAGCAUGAUUAUCUCACAUUCGUGAUCUGCAAUAUCGGAG--CAAUUAGCAUC------- ..((((..(......)..))))(((((.....))))).((((..((.........((((....))))((((......)))))--)...))))...------- ( -27.20) >consensus CUGCGCCUCGAUGAUGUAGCCCGCGUCGAUUAGGCGCAGCUGUAACAUAAUUAUCUCACAUUCGUGAUCUGCAAUAGAGGAG__CUGUUAGCAAC_______ ((((((((.(.((((((.....)))))).).))))))))................((((....))))................................... (-17.33 = -17.58 + 0.25)
| Location | 10,115,606 – 10,115,716 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 77.53 |
| Mean single sequence MFE | -24.80 |
| Consensus MFE | -16.44 |
| Energy contribution | -16.50 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.965764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10115606 110 - 20766785 ACAAUCCCUUCUUCAUUAAGUUUGUGCAGCGACUUCUCUGCAUAUUCUGUUUGCACUGCUACAAGCUGCAGAUGAAGGGUAACUAACGACUUACUUUUAU-UAUCUAAUUA .....((((((.......((..(((((((.(....).)))))))..))(((((((((......)).))))))))))))).....................-.......... ( -28.30) >DroGri_CAF1 5354 107 - 1 ACAAUCCAUUCUUCAUCAAAAUGGUGCAGCGUUUACUCUGCAUCUUCUGUCUGCACUGCUUCAAGCUGCAGAUGAAGGGUGAGUAUUUGAGCAGUCUGUCGAUUC--A--U .(((.(((((((((........(((((((.(....).)))))))....(((((((((......)).))))))))))))))).)...))).(.((((....)))))--.--. ( -31.30) >DroSim_CAF1 6348 108 - 1 ACAAUCCCUUCUUCAUUAAGUUCGUGCAGCGACUUCUUUGCAUAUUCUGUUUGCACUGCUACAAGCUCCAGAUGAAGGGUAACUAACGACUUACUUUUAU-UAUC--AUAA .....((((((.((....((((.((((((.........((((.........)))))))).)).))))...)).)))))).....................-....--.... ( -19.80) >DroEre_CAF1 5202 109 - 1 ACAAUCCCUUCUUCAUCAAGUUCGUGCAGCGACUUCUCUGCAUAUUCUGUUUGCACUGCUACAAGCUCCAGAUGAAAGGUAACCAAUUACUCACUUUUAUAUAUC--AUGC ......((((..(((((.((...((((((.(....).))))))...))(((((........)))))....)))))))))..........................--.... ( -19.70) >DroYak_CAF1 5088 109 - 1 ACAAUCCCUUCUUCAUCAAGAUUGUGCAGCGACUUCUCUGCAUUUUCUGUUUGCAUUGCUACAAGCUCCAGAUGAAGGGUAACCACUAAAUCACUUUUACUUACC--AUAA ..........(((((((.(((..((((((.(....).))))))..)))(((((........)))))....)))))))(((((....((((.....)))).)))))--.... ( -27.60) >DroMoj_CAF1 5337 106 - 1 ACAAUCCGUUCUUCAUUAAACUGGUGCAGCGAUUAUUAUGCAUCUUCUGUCUGCACUGUCACAAGCUGCAAAUGAGAGGUGAGUGAUAAAACAGAA-GUGAAAUU--A--A ...........((((((.....((((((..........)))))).....((((...((((((..(((.(......).)))..))))))...)))))-)))))...--.--. ( -22.10) >consensus ACAAUCCCUUCUUCAUCAAGUUCGUGCAGCGACUUCUCUGCAUAUUCUGUUUGCACUGCUACAAGCUCCAGAUGAAGGGUAACUAAUAAAUCACUUUUAU_UAUC__AU_A ........(((((((((......((((((.(....).)))))).....(((((........)))))....)))))))))................................ (-16.44 = -16.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:29 2006