Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,041,643 – 10,041,755 |
Length | 112 |
Max. P | 0.598176 |
Location | 10,041,643 – 10,041,755 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 97.86 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -22.18 |
Energy contribution | -22.18 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.16 |
Structure conservation index | 0.96 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.598176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10041643 112 + 20766785 AAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUAUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -22.40) >DroSec_CAF1 12597 112 + 1 CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAUAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCUCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((.((((....))))............(((.(((..(((((..(((........))).)))))..))).)))..................))))))) ( -23.00) >DroSim_CAF1 12823 112 + 1 CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCGAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -23.40) >DroEre_CAF1 14603 112 + 1 CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAUUGUGUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((.((((....))))............(((.((((.((((...(((........)))..)))).)))).)))..................))))))) ( -24.20) >DroYak_CAF1 13587 112 + 1 CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((.((((....))))............(((.(((..((((...(((........)))..))))..))).)))..................))))))) ( -22.40) >consensus CAUUAAACGCGCCAGGAAAUGAGAAAUCAUAAAAGAUUAUGAACGAAUAAAGCGGAAUGUACAUGUGUUUGCCGCCGCAAUGUGUGUGUAACAAAUAACAACAAAUUCUGGC ..........(((((((..((.....((((((....))))))(((.(((..((((...(((........)))..))))..))).)))..............))..))))))) (-22.18 = -22.18 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:26 2006