Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,037,429 – 10,037,521 |
Length | 92 |
Max. P | 0.932402 |
Location | 10,037,429 – 10,037,521 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -25.94 |
Consensus MFE | -16.64 |
Energy contribution | -15.83 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -2.44 |
Structure conservation index | 0.64 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10037429 92 + 20766785 UUGUUGCUUUGAUUGGCUG-CAGCUUCUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA (((((((((......((((-(.(((((.(((....--...(((((........)))))......))).))))).)))))..)))))))))..... ( -28.92) >DroPse_CAF1 14035 88 + 1 UUGUUGCUUUUAUUGGGCGUCUGCUUCUGCUUCUGUUUCUGUUUGAUGUUUGCCAAACUAAUUUGGCGGAAGCAACA-------CAGCAGAGAGA .....((((.....)))).((((((..((((((((((...(((((........)))))......))))))))))...-------.)))))).... ( -27.30) >DroSim_CAF1 8617 92 + 1 UUGUUGCUUUGAUUGGCUG-CAGCUUCUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCUGGAAUA ..(((((((......((((-(.(((((.(((....--...(((((........)))))......))).))))).)))))..)))))))....... ( -27.12) >DroEre_CAF1 10266 78 + 1 UUGUUGCUUUGCCUG---------------UUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA (((((((((((((((---------------(((((--((.(((((........)))))......))).)))))))..))).)))))))))..... ( -22.90) >DroYak_CAF1 9269 92 + 1 UUGUUGCUUUGAUUGGAUG-CAGCUACUGCUUUCG--CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA (((((((((....((....-))(((.(((((((.(--((.(((((........)))))......))).))))))).)))..)))))))))..... ( -24.30) >DroPer_CAF1 10381 82 + 1 UUGUUGCUUUUAUUGGGCGUCUGCUUCUGCUUC------UGUUUGAUGUUUGCCAAACUAAUUUGGCGGAAGCAACA-------CAGCAGAGAGA .((((((((((((..((((...((....))...------))))..)))..(((((((....))))))))))))))))-------........... ( -25.10) >consensus UUGUUGCUUUGAUUGGCUG_CAGCUUCUGCUUUCG__CCUGUUUGAUGUUUGCUAAACUAAUUUGGCUGAAGCAGCAGUAUAAGUAGCAGAAAUA .((((((((((...........((....)).....................((((((....)))))))))))))))).................. (-16.64 = -15.83 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006