Locus 2907

Sequence ID 2R_DroMel_CAF1
Location 10,037,219 – 10,037,311
Length 92
Max. P 0.858333
window4794

overview

Window 4

Location 10,037,219 – 10,037,311
Length 92
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 84.76
Mean single sequence MFE -23.04
Consensus MFE -16.38
Energy contribution -17.22
Covariance contribution 0.84
Combinations/Pair 1.11
Mean z-score -2.16
Structure conservation index 0.71
SVM decision value 0.82
SVM RNA-class probability 0.858333
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10037219 92 - 20766785
UUCAAUUUAUUUAGCCAACGAGAAAAAUGCGAAGCAAAUAAAAGGCAGA-----------------AAAAAAAACAUUUUUUGCUGAUGUUUGUUUCUGAUUUUGCUUU
...................(((.(((((..((((((((((...((((((-----------------(((.......)))))))))..))))))))))..))))).))). ( -20.70)
>DroSec_CAF1 8144 109 - 1
UUCAAUUUAUUUAGCCAACGAGAAAAAUGCGAAGCAAAUAAAAGGCAGAAAGGGGGGUGAACCAAAAAAAAAAACAUUUUCUGCUGAUGUUUGUUUCUGAUUUUGCUUU
...................(((.(((((..((((((((((...(((((((((...((....)).............)))))))))..))))))))))..))))).))). ( -25.19)
>DroSim_CAF1 8392 109 - 1
UUCAAUUUAUUUAGCCAACGAGAAAAAUGCGAAGCAAAUAAAAGGCAGAAAGGGGGGUGAACCAAAAAAAAAAACAUUUUCUGCUGAUGUUUGUUUCUGAUUUUGCUUU
...................(((.(((((..((((((((((...(((((((((...((....)).............)))))))))..))))))))))..))))).))). ( -25.19)
>DroEre_CAF1 10041 101 - 1
UUCAAUUUAUUUAGUCAACGAGAAAAAUGUGAAGCAAAUAAAAGGCGGAAGGGGU---GU-----AUAAAAAACCAUUUCUUGCUGAUGUUUGUUUCUGAUUUUGCCUU
...................(((.(((((..((((((((((...((((((((.(((---..-----.......))).)))).))))..))))))))))..)))))..))) ( -22.70)
>DroYak_CAF1 9049 97 - 1
UUCAAUUUAUUUAGCCAACGAGAAAAAUGUGAAGCAAAUAAAAGGCAGAAGAAGG------------AAAAAACACAUUUUUGGUGAUGUUUGUUUCUGAUUUUGCUUU
.....(((((((.((..(((.......)))...)))))))))((((((((..(((------------((.((((((((.....))).))))).)))))..)))))))). ( -21.40)
>consensus
UUCAAUUUAUUUAGCCAACGAGAAAAAUGCGAAGCAAAUAAAAGGCAGAAAGGGG___G______AAAAAAAAACAUUUUUUGCUGAUGUUUGUUUCUGAUUUUGCUUU
...................(((.(((((..((((((((((...(((((((((........................)))))))))..))))))))))..))))).))). (-16.38 = -17.22 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:24 2006