Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,036,009 – 10,036,124 |
Length | 115 |
Max. P | 0.557925 |
Location | 10,036,009 – 10,036,124 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.97 |
Mean single sequence MFE | -40.52 |
Consensus MFE | -30.09 |
Energy contribution | -32.05 |
Covariance contribution | 1.96 |
Combinations/Pair | 1.09 |
Mean z-score | -2.06 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10036009 115 + 20766785 GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGAAGCUCAUCUCGUUCAACUUCAC .......((((((.((.-.(((((((...(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))).))))))).))))))))........ ( -42.00) >DroSec_CAF1 6966 115 + 1 GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC .......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90) >DroSim_CAF1 7165 115 + 1 GGAUCCAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC .......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90) >DroEre_CAF1 8820 115 + 1 GGAUCUAGAGCGAAGAC-GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC .......((((((.((.-.(((((.(((.(((.....((((((....((.....))...))))))(((((----(..((....)).))))))))))))))))).))))))))........ ( -42.90) >DroYak_CAF1 7825 115 + 1 GAAUCCAGAGCGAAGAC-GAAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGCCUG----UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACAUCAC .......((((((.((.-((.((((((((.((.....)).)))..............((((((((((..(----(.......))..))))))))))))))))).))))))))........ ( -39.60) >DroPer_CAF1 6559 97 + 1 AGAUACGGGUCUAAGAUGGGAGCUUCGUGCCUCAUUAAGCCGGAAAAGUGUCAAAUGUCCUGUGUGGCUGCCAAUGGCAGC---------------GGCACUC--------UACCAUCCC .(((((...(((..((((((.((.....)))))))).....)))...))))).........((((.((((((...))))))---------------.))))..--------......... ( -32.80) >consensus GGAUCCAGAGCGAAGAC_GGAGCUUCCUGCCUCAUUAAGCCAGAAAAGUGUCAAAUGUCCUGGCUGGCUG____UGGCAUGGAUGAGCAGCCAGGAGGAGCUCAUCUCGUUCAACUUCAC .......((((((.((...(((((((.((((......((((((...((.(.(....).)))..))))))......))))(((........)))...))))))).))))))))........ (-30.09 = -32.05 + 1.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:23 2006