Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,034,001 – 10,034,118 |
Length | 117 |
Max. P | 0.997113 |
Location | 10,034,001 – 10,034,118 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 93.82 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -29.50 |
Energy contribution | -29.22 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.50 |
Structure conservation index | 0.84 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10034001 117 - 20766785 UAUUUUAUUUUUGUUGCUGCUGGCGGUUUUUCAGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCAC ..........(((..((((((((((((......))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.30) >DroSec_CAF1 4982 116 - 1 UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU-AGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCCC ..........(((..((((((((((((....-.))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.10) >DroSim_CAF1 5178 116 - 1 UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU-AGCUGCC-GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCCC ..........(((..((((((((((((....-.))))))-)))(((((((.....)))))))...(((((((((..(........)..)))))))))......)))..)))....... ( -36.10) >DroEre_CAF1 6929 113 - 1 UAUUUUAUUGUUGUU---GCUGGCGGUUUUU-UGCUGCC-GGUAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAUCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUACCCAU .....(((((....(---(((((((((....-.))))))-))))((((((.....))))))....(((((((((..((........)))))))))))...........)))))..... ( -32.60) >DroYak_CAF1 5939 114 - 1 UAUUUUAUUGUUGUU---GCUGGCGGUUUUU-UGCCGCCAGGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAGUAAGCUUUAGUUUUAGAUUCAGUCCCCAU ......((((..(((---.((((((((....-.))))))))(((((((((.....)))))))...(((((((((..(........)..))))))))).))....))).))))...... ( -33.50) >consensus UAUUUUAUUGUUGUUGCUGCUGGCGGUUUUU_AGCUGCC_GGCAUGGUGCAUAUGGCGCCAUUACAGAGCUUAUCAGCCAGCUUUCGAAUAAGCUUUAGUUUUAGUUUCAGUCCCCAC ..................(((((((((......)))))).)))(((((((.....)))))))...(((((((((..(........)..)))))))))..................... (-29.50 = -29.22 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:21 2006