Locus 2903

Sequence ID 2R_DroMel_CAF1
Location 10,029,282 – 10,029,392
Length 110
Max. P 0.579383
window4790

overview

Window 0

Location 10,029,282 – 10,029,392
Length 110
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 87.36
Mean single sequence MFE -19.54
Consensus MFE -14.90
Energy contribution -15.23
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.76
SVM decision value 0.09
SVM RNA-class probability 0.579383
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10029282 110 + 20766785
UCUGGAGCCGAUAAAUCGCCCUUCGGCAGCAAGAACUGUAAGUUUUCUAUAUAUCAUCUAUAUAGCAUACUAUUAUCUAUGUAAC----AUACUAUCUA---UAUAACAUACUAUCU
..(((((((((...........))))).((((((...(((.((...(((((((.....)))))))...)))))..))).)))...----......))))---............... ( -17.40)
>DroSec_CAF1 169 114 + 1
UCCGGUGCCGAUAAAUCGCCCUUCGGCAGCAAGAACUGUAAGUUUUCUAUAUACCAUCUAUAUAGCAUACUAU---CUACAUAACUAUCUGACUAUAUAUGAUACUAUAUACUAUCU
...(.((((((...........)))))).).(((((.....))))).((((((..((((((((((((......---.............)).))))))).)))..))))))...... ( -20.61)
>DroSim_CAF1 318 114 + 1
UCCGGUGCCGAUAAAUCGCCCUUCGGCAGCAAGAACUGUAAGUUUUCUAUAUACCAUCUAUAUAGCAUACUAU---CUACAUAACUAUCUGACUAUAUAUGAUACUAUAUACUAUCC
...(.((((((...........)))))).).(((((.....))))).((((((..((((((((((((......---.............)).))))))).)))..))))))...... ( -20.61)
>consensus
UCCGGUGCCGAUAAAUCGCCCUUCGGCAGCAAGAACUGUAAGUUUUCUAUAUACCAUCUAUAUAGCAUACUAU___CUACAUAACUAUCUGACUAUAUAUGAUACUAUAUACUAUCU
...(.((((((...........)))))).)..........(((...(((((((.....)))))))...))).............................................. (-14.90 = -15.23 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:20 2006