Locus 2900

Sequence ID 2R_DroMel_CAF1
Location 10,021,404 – 10,021,500
Length 96
Max. P 0.892462
window4786

overview

Window 6

Location 10,021,404 – 10,021,500
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 97.92
Mean single sequence MFE -21.41
Consensus MFE -20.22
Energy contribution -20.42
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 0.94
SVM decision value 0.97
SVM RNA-class probability 0.892462
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10021404 96 + 20766785
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACAGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACGUUUCCACCCACUGGCAGCCAGAAUAAU
.((((...))))((((((......((((...((((.......))))...)))).((....)).....))))))......((((...))))...... ( -21.20)
>DroSec_CAF1 1 96 + 1
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACAGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACUUUUCCAGCCACUGGCAGCCAGAACAAU
.((..(((((((........(((.((((...((((.......))))...)))).))).......)))))))....(((...))).))......... ( -21.56)
>DroSim_CAF1 1 96 + 1
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACAGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACGUUUCCAGCCACUGGCAGCCAGAACAAU
.((((...))))((((((......((((...((((.......))))...)))).((....)).....))))))......((((...))))...... ( -21.20)
>DroEre_CAF1 1 96 + 1
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACAGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACGUUUCCAGCCACUGGCAGCCAGAACAAU
.((((...))))((((((......((((...((((.......))))...)))).((....)).....))))))......((((...))))...... ( -21.20)
>DroYak_CAF1 1 96 + 1
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACGGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACGUUUCCAGUCACUGGCAGCCAGAACAAU
.((((...))))((((((......((((...((((.......))))...)))).((....)).....))))))......((((...))))...... ( -21.90)
>consensus
AGCACAAAGUGCGAAACGACAUCAGCUAAAACUACAGUAGCAGUGGCAGUAGCAGAUAAAUCAAGCACGUUUCCAGCCACUGGCAGCCAGAACAAU
.((((...))))((((((......((((...((((.......))))...)))).((....)).....))))))......((((...))))...... (-20.22 = -20.42 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:16 2006