Locus 290

Sequence ID 2R_DroMel_CAF1
Location 1,720,483 – 1,720,574
Length 91
Max. P 0.703212
window605

overview

Window 5

Location 1,720,483 – 1,720,574
Length 91
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.79
Mean single sequence MFE -22.48
Consensus MFE -16.50
Energy contribution -17.75
Covariance contribution 1.25
Combinations/Pair 1.17
Mean z-score -1.46
Structure conservation index 0.73
SVM decision value 0.36
SVM RNA-class probability 0.703212
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1720483 91 - 20766785
UAACUGAUUUAAUAAU----UUCUUACUCCAGAUUAGCUGUUUUGAGCGCGCAUCUGAUCUGGGGCUGCUCUAUCUGCAGGAAUACGAUCUCGUU
.....((((.......----......(((((((((((.(((.........))).)))))))))))((((.......))))......))))..... ( -23.60)
>DroSec_CAF1 5694 91 - 1
UUAGUAAUUUAUUAAU----UUCUUAUUCCAGAUUAGCUGUUUUGAGCGCGCAUCUGAUCUGGGGCUGCUCUAUCUGCAGGAAUACGAUCUCGUU
...(((..........----......(((((((((((.(((.........))).)))))))))))((((.......))))...)))......... ( -21.50)
>DroSim_CAF1 5715 91 - 1
UUACUAAUUUAUUAAU----UUCUUAUUCCAGAUUAGCUGUUUUGAGCGCGCAUCUGAUCUGGGGCUGCUCUAUCUGCAGGAAUACGAUCUCGUU
................----(((...(((((((((((.(((.........))).)))))))))))((((.......))))))).(((....))). ( -21.20)
>DroEre_CAF1 6202 91 - 1
UAACUUAUUGUUUAAU----UUCUAAUUCCAGAUUAGCUGCUUUGAGCGCGCAUCUGAUCUGGGCCUGCUCUAUCUGCAGGAAUACGAUGUCGUC
.....((((((.....----.......((((((((((.(((.........))).))))))))))(((((.......)))))...))))))..... ( -27.30)
>DroWil_CAF1 6662 95 - 1
CAGCUCAUUAUUUCUUCCCAAUCUUCUAACAGAUAAGCUGCUUUGAACGUGCCUCGGAUCUGGGACUGCUCUACCUGCAGGAAUAUGAUAUAGUC
....((((...(((.(((((((((((.(((((.....))).)).)))((.....))))).)))))((((.......))))))).))))....... ( -18.60)
>DroAna_CAF1 6061 89 - 1
UAAGUUAUC--AUCAU----UUUUUACUGCAGAUUAGCUGCUUCGAACGUGCCUCCGAUCUGGGCCUGCUGUACCUGCAGGAAUAUGACAUCGUG
.........--.((((----......((((((..((((.(((..((.((......)).))..)))..))))...))))))....))))....... ( -22.70)
>consensus
UAACUAAUUUAUUAAU____UUCUUAUUCCAGAUUAGCUGCUUUGAGCGCGCAUCUGAUCUGGGGCUGCUCUAUCUGCAGGAAUACGAUCUCGUU
..........................(((((((((((.(((.........))).)))))))))))((((.......))))............... (-16.50 = -17.75 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:40 2006