Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,198,697 – 1,198,797 |
Length | 100 |
Max. P | 0.857229 |
Location | 1,198,697 – 1,198,797 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -28.72 |
Consensus MFE | -10.98 |
Energy contribution | -12.78 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.16 |
Mean z-score | -2.45 |
Structure conservation index | 0.38 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857229 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1198697 100 - 20766785 UACU-UGUGCAGCCGCAGCA------------GCAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC--- ....-....(((((((((..------------.(((----((......)))))(((......)))..)))))))))((((((..(((((....)))))..).)))))..........--- ( -31.50) >DroVir_CAF1 18028 92 - 1 AAAU-UGUGCCGUGA------------------CGUUAUUUUUGUUGUGGUUGAAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUGGUUUGAUUGAUUCAG------CUGCC--- .(((-(..((((..(------------------((.......)))..))))....))))..........(((((((((..((..(........)..))..).))))------)))).--- ( -24.30) >DroSim_CAF1 13522 100 - 1 UACU-UGUGCAGCCGCAGCA------------GCAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC--- ....-....(((((((((..------------.(((----((......)))))(((......)))..)))))))))((((((..(((((....)))))..).)))))..........--- ( -31.50) >DroEre_CAF1 17247 112 - 1 UACU-UGUGCAGCCGCAGCCGCAGUCGUAGCCGCAG----CCUUUUGUGGUUGAAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC--- ....-...(((((..(((((((((....((((((((----....))))))))(((.......)))..)))))))))((((((..(((((....)))))..).)))))....))))).--- ( -36.40) >DroWil_CAF1 23492 90 - 1 GACUUUGUG----------G------------GUAG----CG----UUGGUGGGAAAUUAAACUCAUUUGCGGUUGAUUGAUUGAUGGAUGGUUUGAUUGAUUCAGUUGUUGCUCUCCGG .......((----------(------------..((----((----..(.((((.((((((((.(((..((((((....))))).)..)))))))))))..)))).)...))))..))). ( -22.70) >DroYak_CAF1 11795 94 - 1 UACU-UGUGCAGCCC------------------CAG----CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC--- ....-...(((((.(------------------(((----((......)))))).....................(((((((..(((((....)))))..).))))))...))))).--- ( -25.90) >consensus UACU_UGUGCAGCCG_________________GCAG____CCUUUUGUGGUUGGAAAUUAAAUUCAUUUGCGGUUGAUUGAUUGAUGGAUAGUUCCAUUGAUUCAGUUUCAGUUGUC___ ........(((((...............................(((..(.((((.......)))).)..)))..(((((((..(((((....)))))..).))))))...))))).... (-10.98 = -12.78 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:53 2006