Locus 2898

Sequence ID 2R_DroMel_CAF1
Location 10,007,344 – 10,007,437
Length 93
Max. P 0.702285
window4782

overview

Window 2

Location 10,007,344 – 10,007,437
Length 93
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 76.24
Mean single sequence MFE -30.60
Consensus MFE -25.28
Energy contribution -24.80
Covariance contribution -0.48
Combinations/Pair 1.18
Mean z-score -0.86
Structure conservation index 0.83
SVM decision value 0.35
SVM RNA-class probability 0.702285
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10007344 93 - 20766785
CAUGGCGUGUUCUAACUGGU----------------------AGUGGUUGGCCGAAAGAGAUGCAAAAUCGCCAAAGGAAACGCGCCGAGGAGCACGUAACUACUCA--AGUCGCAC
....(((((((((...((((----------------------.(((.((((((....).(((.....))))))))......))))))).))))))))).........--........ ( -27.20)
>DroSec_CAF1 10502 89 - 1
CAUGGCGUGUUCUAGCCG----------------------------GUUGGCCGAAAGAGAUGCAAAAUCGCCAGAGGAAACGCGCCGAGGAGCACGUAACUACCAAUCAGUCGCAC
..(((((((((....((.----------------------------.((((((....).(((.....)))))))).)).)))))))))........(..(((.......)))..).. ( -27.60)
>DroSim_CAF1 10927 89 - 1
CAUGGCGUGUUCUAGCCG----------------------------GUUGGCCGAAAGAGAUGCAAAAUCGCCAGAGGAAACGCGCCGAGGAGCACGUAACUACCACUCAGUCGCAC
..(((((((((....((.----------------------------.((((((....).(((.....)))))))).)).)))))))))........(..(((.......)))..).. ( -27.60)
>DroEre_CAF1 10684 111 - 1
CAUGGCGUGUUCUUGCUGGAUGAGCUUCUGAAUGAGAUGGCAAUCGGCUGGCCGAAAGAGAUGCAAAAUCGCCAGAGGAAACGCGCCAAGGAGCACGUAACU------CAGCCGCAC
..((((((((((((.((((.(((((((((.....))).)))..((((....)))).............)))))))))).)))))))))..(((.......))------)........ ( -35.40)
>DroYak_CAF1 10909 111 - 1
CAUGGCGUGUUCUUGCUGGAUGAGCUUCUGAAAGAGAUGGCAAUUGGCUGGCCGAAAGAGAUGCAAAAUCGCCAGAGGAAACGCGCCAAGGAGCACGUAACU------CAGCCGCAC
...((((((((((((((.....)))............((((......((((((....).(((.....)))))))).(....)..))))))))))))(.....------).))).... ( -35.20)
>consensus
CAUGGCGUGUUCUAGCUGG_______________________A__GGUUGGCCGAAAGAGAUGCAAAAUCGCCAGAGGAAACGCGCCGAGGAGCACGUAACUAC____CAGUCGCAC
....(((((((((...(((............................((((((....).(((.....)))))))).(....)...))).)))))))))................... (-25.28 = -24.80 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:12 2006