Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,002,528 – 10,002,629 |
Length | 101 |
Max. P | 0.999307 |
Location | 10,002,528 – 10,002,629 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -19.86 |
Consensus MFE | -13.08 |
Energy contribution | -13.48 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -3.69 |
Structure conservation index | 0.66 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10002528 101 + 20766785 GCUGGUCAAUCACAGUUAACCACCCCUUUGACCCCACAUAAAUACAUAUGGAAAAAUAAAUACAUUUAUGUACAUACAUAUACAUAUGACCAGCUGCUUGC ((((((((.((...(((((........)))))....((((......))))))..............((((((........))))))))))))))....... ( -19.90) >DroSec_CAF1 5682 89 + 1 GCUGGUCAAUCAGAGUUAACCACCCCUUUGACCCCACAUAAAUACAUAUGGAAAAAUAAAUACAUAUAUGU------------AUAUGACCAGCUGCUUGU ((((((((.((((((..........))))))..........(((((((((..............)))))))------------)).))))))))....... ( -23.84) >DroSim_CAF1 6059 89 + 1 GCUGGUCAAUCAGAGUUAACCACCCCUUUAACCCCACAUAAAUACAUAUGGAAAAAUAAAUACAUAUAUGU------------AUAUGACCAGCUGCUUGC ((((((((......(((((........))))).........(((((((((..............)))))))------------)).))))))))....... ( -21.44) >DroEre_CAF1 5943 77 + 1 ACUGGUCAAUCAGAGUUAGCCACCCCUUUAACCCUGCAUAAAUA--UAUGAAAAAAUACAU----------------------AUAUGACCAGCUGCUCGC .((((((...(((.(((((........))))).))).....(((--((((........)))----------------------))))))))))........ ( -18.10) >DroYak_CAF1 5968 77 + 1 ACUGGUCAAUCAGAGUUAACCACCCCUUAACCCCCUCAUAAAUA--UAUGGAAAAAUACAU----------------------AUAUGACCAGCUGGUGGC .((((((.......(((((.......)))))..........(((--((((........)))----------------------))))))))))........ ( -16.00) >consensus GCUGGUCAAUCAGAGUUAACCACCCCUUUAACCCCACAUAAAUACAUAUGGAAAAAUAAAUACAU_UAUGU____________AUAUGACCAGCUGCUUGC ((((((((......(((((........)))))....((((......))))....................................))))))))....... (-13.08 = -13.48 + 0.40)
Location | 10,002,528 – 10,002,629 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 79.91 |
Mean single sequence MFE | -25.04 |
Consensus MFE | -19.46 |
Energy contribution | -20.66 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.09 |
Mean z-score | -2.63 |
Structure conservation index | 0.78 |
SVM decision value | 2.39 |
SVM RNA-class probability | 0.993378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10002528 101 - 20766785 GCAAGCAGCUGGUCAUAUGUAUAUGUAUGUACAUAAAUGUAUUUAUUUUUCCAUAUGUAUUUAUGUGGGGUCAAAGGGGUGGUUAACUGUGAUUGACCAGC .......((((((((((((((((....))))))))..............((((((((....))))))))((((.((..(....)..)).)))))))))))) ( -28.90) >DroSec_CAF1 5682 89 - 1 ACAAGCAGCUGGUCAUAU------------ACAUAUAUGUAUUUAUUUUUCCAUAUGUAUUUAUGUGGGGUCAAAGGGGUGGUUAACUCUGAUUGACCAGC .......((((((((.((------------(((....)))))......(((((((((....))))))))).....(((((.....)))))...)))))))) ( -26.20) >DroSim_CAF1 6059 89 - 1 GCAAGCAGCUGGUCAUAU------------ACAUAUAUGUAUUUAUUUUUCCAUAUGUAUUUAUGUGGGGUUAAAGGGGUGGUUAACUCUGAUUGACCAGC .......((((((((..(------------(((....))))((((...(((((((((....))))))))).))))(((((.....)))))...)))))))) ( -26.40) >DroEre_CAF1 5943 77 - 1 GCGAGCAGCUGGUCAUAU----------------------AUGUAUUUUUUCAUA--UAUUUAUGCAGGGUUAAAGGGGUGGCUAACUCUGAUUGACCAGU .......(((((((((((----------------------(((........))))--))......((((((((..........))))))))..)))))))) ( -22.90) >DroYak_CAF1 5968 77 - 1 GCCACCAGCUGGUCAUAU----------------------AUGUAUUUUUCCAUA--UAUUUAUGAGGGGGUUAAGGGGUGGUUAACUCUGAUUGACCAGU .......(((((((((((----------------------(((........))))--))........((((((((.......))))))))...)))))))) ( -20.80) >consensus GCAAGCAGCUGGUCAUAU____________ACAUA_AUGUAUUUAUUUUUCCAUAUGUAUUUAUGUGGGGUUAAAGGGGUGGUUAACUCUGAUUGACCAGC .......((((((((.................................(((((((((....))))))))).....(((((.....)))))...)))))))) (-19.46 = -20.66 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:10 2006