Locus 2895

Sequence ID	2R_DroMel_CAF1
Location	10,002,391 – 10,002,504
Length	113
Max. P	0.523382

overview

Window 8

Location	10,002,391 – 10,002,504
Length	113
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	76.31
Mean single sequence MFE	-25.45
Consensus MFE	-16.65
Energy contribution	-16.52
Covariance contribution	-0.12
Combinations/Pair	1.35
Mean z-score	-1.54
Structure conservation index	0.65
SVM decision value	-0.02
SVM RNA-class probability	0.523382
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 10002391 113 - 20766785
CUGACCUUGCCAUAUCAUAAUGGCAAUCUCCUGCUUGGGAUGAUGUGUUGCUUUCCAAAGGGUCAGUAAAUGAAUAUAAG--CAUAAGCAAUCAGUCUAAAAGAGAUAAUUGAAC
(((((((((((((......))))).(((((((....)))).)))..............)))))))).............(--(....))..(((((((.....))))...))).. ( -26.20)
>DroSec_CAF1 5545 113 - 1
CUGACCUUGCCAUAUCAUAAUGGCAAUUUCCUGCUUGGGAUGAUGUGCUGCCUUCUAAAGGGUCAGUAAAUGAAUAUAAG--GAUAAGCUGUCAGUCUAAUAGAUAUAAUUCAAC
((((((((((((((((((...((((......))))....)))))))(((((((......))).))))............)--).))))..))))).................... ( -27.20)
>DroEre_CAF1 5805 114 - 1
CUGACCUUGCCAUAUCAAAAUGGCAAUUUCCUGCUCGGGAUGAUUUGCUGCUUUUCAAGAAGUCAGUAAAUGGAACAAAUCCCAUAAACAGUCAAUCUAAAAGAUAUAAUCCAA-
.((((.(((((((......)))))))..........(((((.((((((((((((....)))).)))))))).......))))).......))))(((.....))).........- ( -27.80)
>DroYak_CAF1 5841 103 - 1
CUGACCACGUCGUAUCAAAAUGGCAAUUUCCUGGUCGGAAUGAUAUGCUGCUUCUUAAGGGAUCAGUAAGUGGAUCAAAUCCCAA------------UUAAAGAGAUAAUUCAAC
.((((((((((((......)))))...((((.....)))).....(((((.(((.....))).))))).)))).)))........------------.................. ( -20.60)
>consensus
CUGACCUUGCCAUAUCAAAAUGGCAAUUUCCUGCUCGGGAUGAUGUGCUGCUUUCCAAAGGGUCAGUAAAUGAAUAAAAG__CAUAAGCAGUCAGUCUAAAAGAGAUAAUUCAAC
(((((((((((((......)))))...((((.....))))..................))))))))................................................. (-16.65 = -16.52 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:08 2006