Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 10,000,116 – 10,000,213 |
Length | 97 |
Max. P | 0.511712 |
Location | 10,000,116 – 10,000,213 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 88.78 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -26.62 |
Energy contribution | -27.62 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 10000116 97 + 20766785 CGACGGAGUUGGCCGGGCAGCGGAAGAAA-----G-GGGGCUACAAAAGGCCCACUGGGCGCCCAAAAGAGAGGGAGUUGCUCCAAGAGGCGCUCACUCGAAG (((..((((..(((((((..(....)..(-----(-.(((((......))))).))....)))).........((((...))))....)))))))..)))... ( -35.40) >DroSec_CAF1 3420 96 + 1 CGACGUAGUAGUCCGGGCAGCGGAAGAAA-----G-GGGGCUCCAAAAGGCCCACUGGGCGCCCA-AAGAGAGGGAGUUGAUCCAAGAGCCGAUCACUCGAAG .(((......))).((((..(....)..(-----(-.(((((......))))).))....)))).-........((((.((((........)))))))).... ( -29.80) >DroSim_CAF1 3581 96 + 1 CGACGGAGUAGUCCGGGCAGCGGAAGAAA-----G-GGGGCUCCAAAAGGCCCACUGGGCGCCCA-AAGAGAGGGAGUUGCUCCAAGAGCCGAUCACUCGAAG ....((((((((((((....(....)...-----.-.(((((......))))).)))))).(((.-......)))...))))))..(((.......))).... ( -33.70) >DroEre_CAF1 3642 102 + 1 CGACGGAGUAGUCCGGCCAUCGGAAGAGGGGAGGGGGGGACUCCAAAAGGCCCACUGGGCGCCCA-AGGAGGGGGAGUGGCUCCAAGAGCCGCUCACUCGAAG .....((((..(((..((.((....))(((..((((....)))).....((((...)))).))).-.))..)))(((((((((...))))))))))))).... ( -48.60) >consensus CGACGGAGUAGUCCGGGCAGCGGAAGAAA_____G_GGGGCUCCAAAAGGCCCACUGGGCGCCCA_AAGAGAGGGAGUUGCUCCAAGAGCCGAUCACUCGAAG ....(((((.((((((....(....)...........(((((......))))).)))))).(((........)))....)))))..(((.......))).... (-26.62 = -27.62 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:07 2006