| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,999,063 – 9,999,170 |
| Length | 107 |
| Max. P | 0.600419 |
| Location | 9,999,063 – 9,999,170 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 80.59 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -17.09 |
| Energy contribution | -17.27 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.600419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9999063 107 - 20766785 AUAAAUACAGCACUCGAGUUACAAACGUGCGGUGAAGGUACUUUUGUGCAAGCACCGCGAUAACCGAUUUUCUAAAAUAUUAAUGAGUCAAUCUUCAAUAUAUGUAU ....(((((....(((.((((......(((((((...((((....))))...))))))).))))))).........(((((...((.....))...))))).))))) ( -24.30) >DroSec_CAF1 2400 89 - 1 AUAAAUACGCCACUCGAGGUACAAACGUGCAGUGAAGGUACGUUUGUGCUAGCACCGCAAUAACCGAUUUUCUAAAAUAUUAAUGAGUC------------------ ...........(((((.(((((((((((((.......))))))))))))).((...)).........................))))).------------------ ( -21.60) >DroEre_CAF1 2573 93 - 1 AUAAAUACAGCACUCGAGUUACAAACGUGCGGUGAAGGCACUUUUGUGCAAGCACCACGAUAACCGAU-UUUUCCAAUAUUAAUGAGUCAAUG-------------A .........((((.............))))((((...((((....))))...)))).........(((-((.............)))))....-------------. ( -19.84) >DroYak_CAF1 2557 99 - 1 AUAAAUACAGCACUCGAGUUACAAACGUGCGGUGAAGGUGCUUUUGUGCAAGCACCGCGAUAACCGAUAUUUUCGAAUAAUAAUGAGUUAAUCUACUA--------U ...........(((((...........(((((((...(..(....)..)...))))))).....(((.....)))........)))))..........--------. ( -22.50) >consensus AUAAAUACAGCACUCGAGUUACAAACGUGCGGUGAAGGUACUUUUGUGCAAGCACCGCGAUAACCGAUUUUCUAAAAUAUUAAUGAGUCAAUC_____________U .............(((.((((......(((((((...((((....))))...))))))).)))))))........................................ (-17.09 = -17.27 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:05 2006