Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,997,717 – 9,997,819 |
Length | 102 |
Max. P | 0.685799 |
Location | 9,997,717 – 9,997,819 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 96.57 |
Mean single sequence MFE | -16.93 |
Consensus MFE | -14.90 |
Energy contribution | -14.58 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.35 |
Structure conservation index | 0.88 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9997717 102 - 20766785 UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCCACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG .......(((..(((.(((((.............(((.((((....)))).)))..............(((.((....)).)))...)))))..)))..))) ( -15.40) >DroSec_CAF1 1301 102 - 1 UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCUUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG .......(((..(((.(((((....(((((((((....))))..))))).....((.......(((.....))).......))....)))))..)))..))) ( -18.14) >DroSim_CAF1 1311 102 - 1 UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCGACUUUGUGACGUUUUUGG .......(((..(((.(((((....(((((((((....))))..)))))...((((........((.....))........))))..)))))..)))..))) ( -20.09) >DroEre_CAF1 1290 99 - 1 UUAUUAACCAUUAACACACAACUUCCGAAUUCCAUAACUGGAAUAUU---CUUCGCUUAACCCCUGAAUGCCAACCCCUUUGUAACUUUGUGACGUUUUUGG .......(((..(((.(((((.......((((((....))))))(((---(..............))))..................)))))..)))..))) ( -13.84) >DroYak_CAF1 1321 102 - 1 UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUACUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG .......(((..(((.(((((....(((((((((....))))))..)))...................(((.((....)).)))...)))))..)))..))) ( -17.20) >consensus UUAUUAACCAUUAACACACAACUUCCGAAUUCCAGAACUGGAAUAUUCGACUUCGCUUAACCCCUGAAUGCCAACCCCUUUGCAACUUUGUGACGUUUUUGG .......(((..(((.(((((.......((((((....))))))........................(((.((....)).)))...)))))..)))..))) (-14.90 = -14.58 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:04 2006