Locus 289

Sequence ID 2R_DroMel_CAF1
Location 1,714,335 – 1,714,443
Length 108
Max. P 0.527212
window604

overview

Window 4

Location 1,714,335 – 1,714,443
Length 108
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.36
Mean single sequence MFE -31.46
Consensus MFE -19.43
Energy contribution -20.81
Covariance contribution 1.38
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.527212
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1714335 108 + 20766785
UACGUAUACUUAUGAACGUGCUCUGCAGUUCCUGGUUCAGGGUGGGGUACACCUUUGUCUCCAUUCA------------GACAUCAACCUCCUCACCCGGUGCUUUUUGAUUGUACGGCU
..((((....)))).....(((.(((((((...(((...((((((((........(((((......)------------)))).......))))))))...)))....))))))).))). ( -33.96)
>DroSec_CAF1 5547 108 + 1
UACGUACACAUAUGAACGUGCUCUGCAGUUCCUGGUUCAGGGUGGGGUACACCUUUGUCUCCAUCCA------------GACAUCAACCUCCUCACCGGGUGCUUUUUGAUUGUACGGCU
.((((.((....)).))))(((.(((((((((((((...((((((((.(((....))))))))))).------------(....).........))))))........))))))).))). ( -32.00)
>DroSim_CAF1 6178 97 + 1
UUCGUACACAUAUGAACGUGCUCUGCAGUUCCUGGUUCAGGGUGGGGUACACCUUUGUCUCCAUCCA------------GACAUCAACCUCCUCACCCGGU-----------GUACGGCU
.((((((((....((((.(((...)))))))........((((((((........(((((......)------------)))).......)))))))).))-----------)))))).. ( -36.06)
>DroYak_CAF1 7495 114 + 1
------UACAUAUGAACGUGCUCUGCAGUUCCUGGAUCAGGGUGGAGUACACUUUUGUCUUUAUGAACCAAGAUUCGUUUACCUCAGCCUUAUCACCCGGUGCUUAUUGAUUACACGGCC
------..........((((.((...(((.((..(((.(((.((..(((.((....(((((........)))))..)).)))..)).))).)))....)).)))....))...))))... ( -23.80)
>consensus
UACGUACACAUAUGAACGUGCUCUGCAGUUCCUGGUUCAGGGUGGGGUACACCUUUGUCUCCAUCCA____________GACAUCAACCUCCUCACCCGGUGCUUUUUGAUUGUACGGCU
..(((((......((((.(((...)))))))........((((((((........((((....................)))).......))))))))..............)))))... (-19.43 = -20.81 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:40 2006