Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,996,743 – 9,996,846 |
Length | 103 |
Max. P | 0.927875 |
Location | 9,996,743 – 9,996,846 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -31.72 |
Energy contribution | -31.32 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.36 |
Structure conservation index | 0.96 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.927875 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9996743 103 + 20766785 GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUUCGCGCUCUUUCGCUCUCUUU ....(((((((.......(....)...((((((((......(....)....((((((.....))))))))).((((....))))))))).....))))))).. ( -32.70) >DroSec_CAF1 301 103 + 1 GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU ....(((((((((((...(....)....((((.........(....)....((((((.....))))))(((((....))))))))))).))...))))))).. ( -33.20) >DroSim_CAF1 301 103 + 1 GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU ....(((((((((((...(....)....((((.........(....)....((((((.....))))))(((((....))))))))))).))...))))))).. ( -33.20) >DroEre_CAF1 244 103 + 1 GAUUGGGGGGUAGGCGAAGGCAACAACGGCGCAGCAUAAAAAGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGUGCGCUCUGUCGCUCCCUUU ....(((((((..((....))....((((.((.((((..............((((((.....))))))(((((....))))))))))).)))).))))))).. ( -36.90) >DroYak_CAF1 296 102 + 1 GAUUGGGGGGUAGGCAAAAGCAACAACGGCGCAGCAUAAAAAGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGU-CGCGCUCUCUCGCUCUCUUU ....(((((((((((....))......(((((.((.......)).......((((((.....))))))(((((....)))))-.)))))..)).))))))).. ( -29.70) >consensus GAUUGGGGAGUAGGCAAAGGCAACAACGGCGCAGCAUAAAAGGCAACAACAAUGGGCUAAAGGCCUAUGCUGGGACACUAGUGCGCGCUCUUUCGCUCUCUUU ....(((((((..((....))......(((((.((.......)).......((((((.....))))))(((((....)))))..))))).....))))))).. (-31.72 = -31.32 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006