Locus 2887

Sequence ID 2R_DroMel_CAF1
Location 9,996,137 – 9,996,254
Length 117
Max. P 0.976058
window4766

overview

Window 6

Location 9,996,137 – 9,996,254
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 94.53
Mean single sequence MFE -33.12
Consensus MFE -28.14
Energy contribution -28.34
Covariance contribution 0.20
Combinations/Pair 1.06
Mean z-score -1.94
Structure conservation index 0.85
SVM decision value 1.76
SVM RNA-class probability 0.976058
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9996137 117 + 20766785
UAUGUUCGAUUGUUUUCGGUCACCAGAAGAAAACUCGUAAAAUCUCGGAAUACCCGCAAAUGCCCGUCGACUUCUGACUCGAGGGGUUCUUGAAUUGCACUCGAAGUAUCGAACAAC
..((((((((.((((((..((....)).))))))..((((.....(((.....)))(((..((((.((((........)))).))))..)))..)))).........)))))))).. ( -33.80)
>DroSec_CAF1 43838 117 + 1
UAUGUUCGAUUGUUUUCGGUCACCAGAGGAAAACUCGUAAAAUCUCGGAAUACCCGCAAAUGCUCGUCGACUUCUGACUCGAGGGGUUCUUGAAUUGCACUCGAAGUAUCGAACAAC
..((((((((...((((((......(((.....)))((((.....(((.....)))(((..((((.((((........)))).))))..)))..))))..)))))).)))))))).. ( -33.90)
>DroSim_CAF1 45012 117 + 1
UAUGUUCGAUUGUUUUCGGUCACCAGAGGAAAACUCGUAAAAUCUCGGAAUACCCGCAAAUGCUCGUCGACUUCUGACUCGAGGGGUUCUUGAAUUGCACUCGAAGUAUCGAACAAC
..((((((((...((((((......(((.....)))((((.....(((.....)))(((..((((.((((........)))).))))..)))..))))..)))))).)))))))).. ( -33.90)
>DroEre_CAF1 44164 117 + 1
UAUGUUCGAUUGUUUUCGCUCACCAGAAGAAAACUCGUAAAAUCUCGGAACACCCGCAAAUGCCUUUCGACUUCUUACUCGAGGGGAUUGUGAAUUGCACUCGACGUAUCGAACAAC
..((((((((.((((((..((....)).))))))..((((......((....))(((((...((((((((........)))))))).)))))..)))).........)))))))).. ( -31.30)
>DroYak_CAF1 47011 117 + 1
UACGUUCGAUUGUUUUCGGUCACCAGAAGAAAACUCGUAAAAUCUCGGAAUACCCGCAAAUGCUCUUCGACUUUUGAAUCGAGGGGUUUUUGAAUUGCACUCGAAGUAUCGAACAAC
...(((((((.((((((..((....)).))))))..((((.....(((.....)))((((.(((((((((........))))))))).))))..)))).........)))))))... ( -32.70)
>consensus
UAUGUUCGAUUGUUUUCGGUCACCAGAAGAAAACUCGUAAAAUCUCGGAAUACCCGCAAAUGCUCGUCGACUUCUGACUCGAGGGGUUCUUGAAUUGCACUCGAAGUAUCGAACAAC
..((((((((.((((((..((....)).))))))..((((.....(((.....)))(((..((((.((((........)))).))))..)))..)))).........)))))))).. (-28.14 = -28.34 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:57 2006