Locus 2883

Sequence ID 2R_DroMel_CAF1
Location 9,971,179 – 9,971,274
Length 95
Max. P 0.757399
window4761

overview

Window 1

Location 9,971,179 – 9,971,274
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.19
Mean single sequence MFE -27.55
Consensus MFE -18.19
Energy contribution -18.42
Covariance contribution 0.22
Combinations/Pair 1.21
Mean z-score -1.71
Structure conservation index 0.66
SVM decision value 0.49
SVM RNA-class probability 0.757399
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9971179 95 - 20766785
-ACAAUUUUCUUU-AUACCUUAACUCCUAUUGGUGGCUGACUGAGUUGGCCAAUCGCAGCGCUCUCUGCCGGCGCAUGCGUCG-CUGUUACCGCUUUU
-............-.................((((((..((...))..)))....(((((((.....)).((((....)))))-)))).)))...... ( -24.90)
>DroSec_CAF1 28237 96 - 1
AACAAUUUUCCUU-AUACCUUUACUCCUAUUGGUGGCUGGCUGAGUUGGCCAAUGGCAGCGCUCUCUGCCGGCGCAUGCGUUG-CUGUUACCGCUUUU
.............-.................(((((((((((.....)))))..((((((((....(((....))).))))))-))))))))...... ( -28.60)
>DroSim_CAF1 29268 95 - 1
-ACAAUUUUCCUU-AUACCUUAACUCCUAUUGGUGGCUGGCUGAGUUGGCCAAUCGCAGCGCUCUCUGCCGGCGCAUGCGUUG-CUGUUACCGCUUUU
-............-.................(((((((((((.....)))))...(((((((....(((....))).))))))-).))))))...... ( -27.60)
>DroEre_CAF1 28502 94 - 1
--CAAUUUUCUUU-UUAGCUUAACUCCGAUUGGUGGCUGACUGAGUUGGCCAAUCGCAGCGCUCUCUGCCGGCGCAUGCGUCG-CUGUUACCGCUUUU
--...........-..(((.((((..((((.((((((..((...))..))).)))((((((((.......))))).)))))))-..))))..)))... ( -28.80)
>DroYak_CAF1 30216 95 - 1
--CAAUUUUCUUUUUUACCUCAACUCCUAUUGGUGGCUGACUGAGUUGGCCAAUCGCAGCGCUCUCUGCCGGCGCAUGCGUCG-CUGUUACCGCUUUU
--.............................((((((..((...))..)))....(((((((.....)).((((....)))))-)))).)))...... ( -24.90)
>DroAna_CAF1 25506 83 - 1
-ACAA-----------AG---CACUCCCAUUGGCUGAGGAAUUUUUCGACCAAUAGGAGCGCCUUUCUGUGGCGCAUGCGUCUUAUGCCACAGGACUU
-....-----------.(---(.((((.(((((.(((((....))))).))))).)))).))..((((((((((...........))))))))))... ( -30.50)
>consensus
_ACAAUUUUCUUU_AUACCUUAACUCCUAUUGGUGGCUGACUGAGUUGGCCAAUCGCAGCGCUCUCUGCCGGCGCAUGCGUCG_CUGUUACCGCUUUU
..............................(((((((((((...)))))))....((((((((.......))))).)))..........))))..... (-18.19 = -18.42 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:52 2006