| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,959,638 – 9,959,733 |
| Length | 95 |
| Max. P | 0.935278 |
| Location | 9,959,638 – 9,959,733 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Mean single sequence MFE | -30.50 |
| Consensus MFE | -30.50 |
| Energy contribution | -30.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 1.00 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935278 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9959638 95 - 20766785 CACACGUGUUUAAAUGGCUGAGUGUGGGUGUGAGUGCAAGGAUGUGCGUGAGACAUUUUGGCGGGCGCACAGUGGUUUGGGUGUAUGCCAGAAAG (((((..(((.....)))...))))).(((((..(((.(((((((.(....)))))))).)))..))))).....(((((.......)))))... ( -30.50) >DroSec_CAF1 16951 95 - 1 CACACGUGUUUAAAUGGCUGAGUGUGGGUGUGAGUGCAAGGAUGUGCGUGAGACAUUUUGGCGGGCGCACAGUGGUUUGGGUGUAUGCCAGAAAG (((((..(((.....)))...))))).(((((..(((.(((((((.(....)))))))).)))..))))).....(((((.......)))))... ( -30.50) >DroSim_CAF1 17928 95 - 1 CACACGUGUUUAAAUGGCUGAGUGUGGGUGUGAGUGCAAGGAUGUGCGUGAGACAUUUUGGCGGGCGCACAGUGGUUUGGGUGUAUGCCAGAAAG (((((..(((.....)))...))))).(((((..(((.(((((((.(....)))))))).)))..))))).....(((((.......)))))... ( -30.50) >consensus CACACGUGUUUAAAUGGCUGAGUGUGGGUGUGAGUGCAAGGAUGUGCGUGAGACAUUUUGGCGGGCGCACAGUGGUUUGGGUGUAUGCCAGAAAG (((((..(((.....)))...))))).(((((..(((.(((((((.(....)))))))).)))..))))).....(((((.......)))))... (-30.50 = -30.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006