Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,953,559 – 9,953,649 |
Length | 90 |
Max. P | 0.506261 |
Location | 9,953,559 – 9,953,649 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 89.04 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -25.74 |
Energy contribution | -26.52 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.17 |
Mean z-score | -1.89 |
Structure conservation index | 0.81 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506261 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9953559 90 + 20766785 AACAGCGGAAUAAGGAUCUCAGAAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC ............((((...(((((.(((....(..((((((....))))))..)(((((((...)).)))))..))).))))).)))).. ( -28.70) >DroSec_CAF1 10794 90 + 1 AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC ....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00) >DroSim_CAF1 11523 90 + 1 AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC ....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00) >DroEre_CAF1 10934 90 + 1 AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUUGUGC .((((((((....(((((....)))))....((....)).....))))))))..((((((((..((((.....)))).....)))))))) ( -34.10) >DroYak_CAF1 11939 90 + 1 AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC ....((((.....(((((....)))))((((((((((((((....)))))....(((((((...)).))))).)))))))))....)))) ( -32.00) >DroAna_CAF1 9549 81 + 1 AGUAUCAGGACUAUGAAAGCUGGAAGCAGUAGCAGCAGCGGGAAUCCGCUGUGGGCAUAGGC---CAUGUGCAAUGGCUUCUGC------ .....(((((((((....((((....)))).((.(((((((....)))))))..))))))((---(((.....)))))))))).------ ( -32.10) >consensus AACAGCGGAAUAAGGAUCUCAGGAUCCAGGAGCUGUAGUGGGAAUCCGCUGUGGGCAUAGGCUACCAUGUGCAAUGGCUUCUGCUCCUGC ...(((((((...(((((....))))).....(..((((((....))))))..)(((((........)))))......)))))))..... (-25.74 = -26.52 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:48 2006