Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,935,109 – 9,935,210 |
Length | 101 |
Max. P | 0.992079 |
Location | 9,935,109 – 9,935,210 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 95.84 |
Mean single sequence MFE | -20.75 |
Consensus MFE | -19.78 |
Energy contribution | -19.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.95 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9935109 101 + 20766785 A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40) >DroSec_CAF1 70582 101 + 1 A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40) >DroSim_CAF1 56437 101 + 1 A-AAAAAGAGGCAGAAAGAAAA--AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .-.....((((..((..((((.--.(((((((..(....)..((((............))))...)))))))....))))..))..))))(((......))).. ( -22.40) >DroEre_CAF1 58460 103 + 1 A-AAAAAGAGGCAGAAAAAAAACAAAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .-.....((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. ( -19.85) >DroYak_CAF1 53865 103 + 1 A-AAAAAGAGGCAGAAAAAAAAACAAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .-.....((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. ( -19.85) >DroAna_CAF1 52051 95 + 1 AAAAAAAGAGGCAGAA---------AAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .......((((..((.---------((((((...(....)..((((............))))...........))))))...))..))))(((......))).. ( -17.60) >consensus A_AAAAAGAGGCAGAAAGAAAA__AAAAUUGAAACGAAAGCAGAGGGUAUUUAACCGACCUCAAAUCAAUUUGCAAUUUCAGUCGAUCUCCGCGUUGCAGCGUU .......((((..((..........(((((((..(....)..((((............))))...)))))))..........))..))))(((......))).. (-19.78 = -19.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:41 2006