Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,932,862 – 9,932,954 |
Length | 92 |
Max. P | 0.782313 |
Location | 9,932,862 – 9,932,954 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 72.32 |
Mean single sequence MFE | -16.54 |
Consensus MFE | -10.72 |
Energy contribution | -10.12 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.22 |
Mean z-score | -1.48 |
Structure conservation index | 0.65 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9932862 92 - 20766785 AGCUGGUGGCAUA-------------------GCCAACAAGCGAACCGCAAAUGGCAAAAGAUUUAUUUAAUACAAAUCAAAAUUAUGAUUUGAUAUUUUUUUUUUGUUUU .(((..((((...-------------------))))...)))...........(((((((((.......(((((((((((......))))))).))))..))))))))).. ( -19.70) >DroSec_CAF1 68357 72 - 1 AGCUGG-----------------------------------CGAACCGCAAAUGGCAAAUGAUUUAUUUAAUACAAAUCAAAAUUAUGAUUUGAUAUUU----UUCGGUUU ......-----------------------------------.(((((((.....)).................(((((((......)))))))......----...))))) ( -12.10) >DroSim_CAF1 54218 72 - 1 AGCUGG-----------------------------------CGAACCGCAAAUGGCAAAUGAUUUAUUUAAUACAAAUCAAAAUUAUGAUUUGAUAUUU----UUCGGUUU ......-----------------------------------.(((((((.....)).................(((((((......)))))))......----...))))) ( -12.10) >DroEre_CAF1 56223 107 - 1 AGCUGGUGGCAUACAAGCCAACAAGCCAACAAGCCAGCAAGCGGACCGCAAACGGCAAAUGAUUUAUUUAAUACAAAUCAAAAUUAUGAUUUGAUAUUU----UUCGGUUU .(((((((((......))).....(....)..))))))....(((((((.....)).................(((((((......)))))))......----...))))) ( -24.80) >DroAna_CAF1 50388 82 - 1 AGCAA-------C-----------------GCAGCAACAAACAAACCGCAAAUGGCAAAUGAUUUAUUUAAUAAAAAUCAAAAUUAUGAUUUU-UGUUU----UCGGGUUU .((..-------.-----------------...)).......(((((((.....)).............(((((((((((......)))))))-)))).----...))))) ( -14.00) >consensus AGCUGG____________________________CA_CAA_CGAACCGCAAAUGGCAAAUGAUUUAUUUAAUACAAAUCAAAAUUAUGAUUUGAUAUUU____UUCGGUUU ..........................................(((((((.....)).............(((((((((((......))))))).))))........))))) (-10.72 = -10.12 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:38 2006