Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,922,463 – 9,922,568 |
Length | 105 |
Max. P | 0.679627 |
Location | 9,922,463 – 9,922,568 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -26.92 |
Consensus MFE | -18.13 |
Energy contribution | -17.47 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.24 |
Mean z-score | -1.37 |
Structure conservation index | 0.67 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9922463 105 + 20766785 AUAUUCAUAUGGAC--AUCCAGACAGACAUGCAGUCUGUGGGUGUCACGUUUCGCCAGCCA-AAACAUCCGCUGUGAGUGGCAUACGCACAGAAUACCGAG--C-AAAACA .(((((..((((((--((((..((((((.....))))))))))))).)))...((..((((-..(((.....)))...))))....))...))))).....--.-...... ( -30.60) >DroPse_CAF1 38877 106 + 1 AGACACAAACACACAGACUCAGAAGGACAAACAGUCUGUGAGUGUCACGUUUCGACAGUCA-AAACAUCCGCUGUGAGUGGCAUACGC--AAAAUACAAGG--CCAAUACA .(((((.....((((((((.............)))))))).)))))....(((.(((((..-........))))))))((((......--..........)--)))..... ( -23.11) >DroEre_CAF1 45985 103 + 1 CGGCUGAUAUGGAC--ACCCAGACAGACAUGCAGUCUGUGGGUGUCACGUUUCGCCAGCCA-AAACAUCCGCUGUGAGUGACAUACGC--AAAAUGCCGAG--C-AAAACA ((((.......(((--((((..((((((.....))))))))))))).(((.((((((((..-........))))...))))...))).--.....))))..--.-...... ( -34.80) >DroYak_CAF1 41161 103 + 1 GGAUUCACAUGGAC--AUCUAGAGAGACACGCAGUCUGUGGGUGUCACGUUUCGCCAGGCC-AAACAUCCGCUGUGAGUGGCAUACGC--AAAAUACCGAG--C-AAAACA (((((((((((((.--.........(((((.((.....)).)))))..((((.((...)).-)))).)))).))))))).((....))--......))...--.-...... ( -26.60) >DroAna_CAF1 40730 104 + 1 GGAGUCAGACAAAC--AAACAGACGGACAC--GGUCUGCGAGUGUCACGUUUCGCCAGCCGAAAACAUCCGUUGUGAGUGGCAUACGC--AAAAUUCAAAUAAA-AAAAUA .((((.........--....((((......--.))))(((.(((((((...((((.(((.((.....)).)))))))))))))).)))--...)))).......-...... ( -23.20) >DroPer_CAF1 39933 106 + 1 AGACACAAACACACAGACACAGAAGGACAAACUGUCUGUGAGUGUCACGUUUCGACAGUCA-AAACAUCCGCUGUGAGUGGCAUACGC--AAAAUACAAGG--CCAAUACA .(((((.....((((((((.............)))))))).)))))....(((.(((((..-........))))))))((((......--..........)--)))..... ( -23.21) >consensus AGACUCAAACAGAC__ACCCAGACAGACAAGCAGUCUGUGAGUGUCACGUUUCGCCAGCCA_AAACAUCCGCUGUGAGUGGCAUACGC__AAAAUACAAAG__C_AAAACA ........................((((.....))))(((.(((((((...(((.((((...........)))))))))))))).)))....................... (-18.13 = -17.47 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:36 2006