Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,920,704 – 9,920,803 |
Length | 99 |
Max. P | 0.607267 |
Location | 9,920,704 – 9,920,803 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.54 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -24.68 |
Energy contribution | -28.52 |
Covariance contribution | 3.84 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9920704 99 + 20766785 -CGGAUUAGCUGGGAAAAAUUCCAGAUCCGGCAACUGAUUCUGACAGGCAAUUAGAGUGUUGUAGGGAGUGGACCUCAGUUGCUAGU-----------------UUCCCAAACACUC -(((((...((((((....)))))))))))((((((((.((((.(..(((((......)))))..)...))))..))))))))....-----------------............. ( -29.80) >DroSec_CAF1 51850 116 + 1 -CGGAUUAGCUGGGAGAAAUUCCAGAUCCGGCAACUGAUUCUGACAGGCAAUUAGCGUGUUGUAGGGAGUGGACCUUAGUUGCUAGUAAAUUGAAAGGGUCAUGUUCCCAAACACUC -(((((...((((((....)))))))))))....((((((((....)).)))))).(((((...(((((..((((((((((.......)))))...)))))...))))).))))).. ( -37.30) >DroSim_CAF1 39350 116 + 1 -CGGAUUAGCUGGGAGAAAUUCCAGAUCCGGCAACUGAUUCUGACAGGCAAUUAGAGUGUUGUAGGGAGUGGACCUCAGUUGCUAAUAAAUUGAAAGGGUCAUGUUCCCAAACACUC -(((((...((((((....)))))))))))((..(((.......))))).....(((((((...(((((..((((((((((.......))))))...))))...))))).))))))) ( -40.90) >DroEre_CAF1 44280 116 + 1 -CGGACUAACAGCAACAAACUCCAGAUCCGUCUAGUGAUUCUGACAGGCAAUUAGAGUGUUGAAGGGAGUGGACCUCAGUUGCCAGUAAAUUGAAAGGGUCAUGUUCCCAAACAGUC -..((((.....((((..((((.....(((((.((.....))))).))......))))))))..(((((..((((((((((.......))))))...))))...)))))....)))) ( -28.90) >DroYak_CAF1 39564 117 + 1 ACGGAUUAGCAGGGAAGAGUCCCAGAUCCGUCUAGUGAUUCUGACAGGCAAUUAGAGUGCUGCUGGGAGUGGACUUCAGUUGCCAGUAAAUUGAAUGGGUCAUGUUCCCAAACACUC (((((((....((((....)))).)))))))..((((((((..((.(((((((..(((.(..(.....)..))))..))))))).)).....))))(((.......)))...)))). ( -37.70) >consensus _CGGAUUAGCUGGGAAAAAUUCCAGAUCCGGCAACUGAUUCUGACAGGCAAUUAGAGUGUUGUAGGGAGUGGACCUCAGUUGCUAGUAAAUUGAAAGGGUCAUGUUCCCAAACACUC .(((((...((((((....))))))))))).....(((((((....)).)))))(((((((...(((((..((((((((((.......))))))...))))...))))).))))))) (-24.68 = -28.52 + 3.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:35 2006