Locus 2867

Sequence ID 2R_DroMel_CAF1
Location 9,916,752 – 9,916,852
Length 100
Max. P 0.762896
window4741

overview

Window 1

Location 9,916,752 – 9,916,852
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 94.53
Mean single sequence MFE -18.14
Consensus MFE -13.70
Energy contribution -13.86
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -2.26
Structure conservation index 0.76
SVM decision value 0.51
SVM RNA-class probability 0.762896
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9916752 100 + 20766785
-CCGA-ACCCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUAGCUAGCUAGCUUGCAUACGGUUGAAAUUUUAACACACCA
-....-...........(((((((....(((..(((((((((......).))))))))..((((....)))).)))...)))))))................ ( -17.80)
>DroSec_CAF1 48076 100 + 1
-CCGAAACCCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUA-CGAGCUAGCUCGCAUACGGUUGAAAUUUUAACACACCA
-................(((((((.........(((((((((......).)))))))).....-((((....))))...)))))))................ ( -19.00)
>DroSim_CAF1 35418 99 + 1
-CCGA-ACCCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUA-CGAGCUAGCUUGCAUACGGUUGAAAUUUUAACACACCA
-....-...........(((((((.........(((((((((......).)))))))).....-((((....))))...)))))))................ ( -16.90)
>DroEre_CAF1 40360 99 + 1
CCCAA-ACGCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUA-CGGGCUAGC-UGCAUAUGGGUGAAAUUUUAACACACCA
((((.-..(((.(..(((...((.....))...(((((((((......).)))))))).....-.)))..)..-)))...)))).................. ( -18.30)
>DroYak_CAF1 35515 100 + 1
UCCAA-ACCCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUA-CGGGCUAGCUUGCAUAUGGGUGAAAUUUUAACACACCA
.....-(((((......(((((((((.......(((((((((......).)))))))).....-.)))).)).)))....)))))................. ( -18.72)
>consensus
_CCGA_ACCCAAUUCCCCAACUGUCCAUCAAACAAUUAUGCCAGCCAAGUGCAUAAUUAACUA_CGAGCUAGCUUGCAUACGGUUGAAAUUUUAACACACCA
.................(((((((.........(((((((((......).)))))))).........((......))..)))))))................ (-13.70 = -13.86 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:32 2006