Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,891,045 – 9,891,165 |
Length | 120 |
Max. P | 0.505007 |
Location | 9,891,045 – 9,891,165 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.25 |
Mean single sequence MFE | -29.94 |
Consensus MFE | -13.86 |
Energy contribution | -16.02 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.34 |
Mean z-score | -1.74 |
Structure conservation index | 0.46 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.505007 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9891045 120 + 20766785 AAAGUUAUGGAUGAGGCGUAUGCGUUAUCACGAUGCACAAAGGGCAUUUGAGAAAGCGAUAACACGCUUGAAAACUUGCAAAACUAGCAGUUUCGAACAGCAGUGCCGUAAAAAAGAUAU ....((((((((((.((....)).))))).....((((.....((.((((((((((((......)))))......((((.......)))))))))))..)).)))))))))......... ( -26.70) >DroSec_CAF1 14319 120 + 1 AAAGUUAUGGAUGAGGCGUAUGCAAUAUUAUUGUGCAAAAAGCGCUUUUGAGAAAGCGAUAAGCUGGUUGAAAAAUUGCAAAAUGACCAGUCUCGAACAGAAGAGCCGUAAAAAAGGGAU ....((((((....(((((.((((((......((((.....))))((((.((..(((.....)))..)).))))))))))..))).))...(((........)))))))))......... ( -26.40) >DroSim_CAF1 13439 120 + 1 AAAGUUAUGCAUGAGGCGUAUGCAAUAUUAUUGUGCAAAAAGCGCCUUUGAGAAAGCGAUAAGCUGCUUGAAAAAUUGCAAAAUGACCAGUCUCGAACAGAAGAGACGUAAAAAAGGGAU .......(((....(((((.((((((......((((.....)))).((..((..(((.....))).))..))..))))))..))).)).(((((........)))))))).......... ( -28.20) >DroEre_CAF1 18450 120 + 1 AAGGUCUUGGAUGAGGCGUUUUCGUUAUUACAGUGCAGGAAACGCUUUUAUGAAAGCAAUAAACUCUAUGAAGAACUGCAGAGUUUGCAGUUUCGAGCAGGAGUGCCAGCGAACUGAUCU .(((((..(..((.(((((((((((.........((.(....)))....)))))))).....(((((.((..(((((((((...)))))))))....))))))))))..))..).))))) ( -32.42) >DroYak_CAF1 14332 120 + 1 AAAAACUUGGAUGAGGCGUUCGCUUUAUCACAGAGCAGGAAACGUUUUUCUGAAAGCGAUAAACUCCUUGAAGAACUGCAGAAUGAGCAGUUUCGAGCAGGAGUGCCAGCAAACUGAUCU .........((((((((....)))))))).(((..((((((.....))))))...((.....((((((.(..(((((((.......)))))))....)))))))....))...))).... ( -36.00) >consensus AAAGUUAUGGAUGAGGCGUAUGCAUUAUUACAGUGCAAAAAGCGCUUUUGAGAAAGCGAUAAACUGCUUGAAAAAUUGCAAAAUGAGCAGUUUCGAACAGAAGUGCCGUAAAAAAGAUAU ....((((((..(((((((.((((((.....))))))....)))))))...............(((.(((((..(((((.......)))))))))).))).....))))))......... (-13.86 = -16.02 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:29 2006