Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,880,080 – 9,880,181 |
Length | 101 |
Max. P | 0.772225 |
Location | 9,880,080 – 9,880,181 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.13 |
Mean single sequence MFE | -34.58 |
Consensus MFE | -20.95 |
Energy contribution | -20.73 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.31 |
Mean z-score | -1.82 |
Structure conservation index | 0.61 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9880080 101 - 20766785 GUUGCGAACUUGCUGUUGGCGGUGCGCAGCAGCUGAUUCAAGUGCUGCGUCAGCGAGGAUCGCAGUGGCGAAAGUUCGUGCAUAGCGCGGUUCUGAA-AUA--U .((((((.(((((((........((((((((.((......)))))))))))))))))..))))))..((....))((((((...)))))).......-...--. ( -39.00) >DroVir_CAF1 3107 102 - 1 GUGGCAUACUUGGAGUUGGCGGUGCGCAGCAGCAUGUUCAUAUGUUGCGUGAGUGAUGAUCGCAGCGGCGAGAGCUCAUGCAUUGCACGAUUCUAUGGAGA--G ........(.(((((((((((((((...((((((((....))))))))((((((.....((((....))))..))))))))))))).)))))))).)....--. ( -41.20) >DroPse_CAF1 5419 103 - 1 GUGACGAACUUGGAGUUGGCAGUGCGCAACAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUG-GAAAAG ...........(((((((((.(((((.....((((((((...((((.....))))..)))).))))(((....)))..))))).)).)))))))...-...... ( -32.50) >DroMoj_CAF1 5355 101 - 1 GUUGCAUACUUGGAGUUGGCGGUGCGCAGCAGCAGGUUCAUGUGUUGUGUGAGUGAUGAACGCAGAGGCGAGAGCUCGUGCAUGGCACGAUUCUAAA-AGA--A .........(((((((((((.((((((.((((((.(....).))))))..((((......(((....)))...)))))))))).)).))))))))).-...--. ( -35.80) >DroAna_CAF1 3039 101 - 1 GUAAUAAACUUGGAAUUAGCAGUACGCAGUAGCUGAUUCAUGUGCUGGGUAAGCGAAGAGCGCAGAGGAGACAACUCAUGCAUAGCACGGUUCUGUA-AAA--U ...(((((((..((((((((...........))))))))..((((((.(((.(((.....))).(((.......))).))).)))))))))).))).-...--. ( -26.50) >DroPer_CAF1 5429 103 - 1 GUGACGAACUUGGAGUUGGCAGUGCGCAACAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUG-GAAAAG ...........(((((((((.(((((.....((((((((...((((.....))))..)))).))))(((....)))..))))).)).)))))))...-...... ( -32.50) >consensus GUGACAAACUUGGAGUUGGCAGUGCGCAGCAGCUGGUUCAUGUGCUGAGUGAGUGAGGAACGCAGCGGCGAGAGCUCAUGCAUAGCACGAUUCUGUA_AAA__G ..........((((((((((.((((((..((((..........)))).....(((.....))).))(((....)))...)))).)).))))))))......... (-20.95 = -20.73 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:26 2006