Locus 2862

Sequence ID 2R_DroMel_CAF1
Location 9,878,395 – 9,878,494
Length 99
Max. P 0.535146
window4734

overview

Window 4

Location 9,878,395 – 9,878,494
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -25.97
Consensus MFE -18.64
Energy contribution -19.45
Covariance contribution 0.81
Combinations/Pair 1.10
Mean z-score -1.33
Structure conservation index 0.72
SVM decision value 0.00
SVM RNA-class probability 0.535146
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9878395 99 - 20766785
GUGAAGAACCACUUGCAGCUGCACCUUGGGCUUGCCCUCAGGAGAUAUCUUUUGAGCUGCAU--AUUAA-AAAUUAAGAGGUUACCAAAACUG-GUGAAGAAG
(((......))).((((((........(((....)))(((((((....))))))))))))).--.....-...........((((((....))-))))..... ( -27.60)
>DroSec_CAF1 1659 99 - 1
GUGGAGUACCACUUGCAGCUGCACCUUGGGUUUGCCCUCAGGAGAUAUCUUUUGGGCUGCAUAAAUUAA-AAAUA--UGGGUUACGAAAUCUG-GCCAAGAAG
((((....)))).(((((((.......(((....))).((((((....)))))))))))))........-.....--..(((((.(....)))-)))...... ( -28.50)
>DroSim_CAF1 1604 98 - 1
GUGGAGUACCACUUGCAGCUGCACCUUGGGUUUUCCCUCAGGAGAUAUCUUUUGGGCUGCAU--AUUAA-AAAUAA-AGGGUUACCAAAACUG-GUGAAAAAG
((((....)))).(((((((.......(((....))).((((((....))))))))))))).--.....-......-....((((((....))-))))..... ( -29.30)
>DroEre_CAF1 5765 98 - 1
GUGGAGUACCACUUGCAGCUGCACCUUCGGUUUUCCCUCAGGAGAUAUCUUUUGAGCUGAAU--AUAAAAAAAUA--GGGGUUACCAAAUAUG-GUAAAGAAG
((((....)))).(((....))).((((.((((...((((((((....))))))))..))))--...........--....((((((....))-)))).)))) ( -23.70)
>DroYak_CAF1 1574 98 - 1
GUGGAGUACCACUUGCAGCUGCACCUUGGGUUUACCCUCAGGAGAUAUCUUUUGGGCUGGAU--AUAAA-AAAUA--UUGGUUACCAAAUCUGAGUGAACAAG
((((....))))...(((((.......(((....))).((((((....)))))))))))...--.....-.....--(((.((((((....)).)))).))). ( -23.60)
>DroAna_CAF1 1357 90 - 1
GUGCAGCACAACCUGCAGCUGAACCUUGGGUUUUCCCUCUGGAGAGAUCUUCUGGGCUGCAG--AGUAA-CAAA---------AUCAAAAAUG-AUGAAUUAA
(((...))).((((((((((.(.....(((....)))...((((....))))).))))))))--.))..-....---------((((....))-))....... ( -23.10)
>consensus
GUGGAGUACCACUUGCAGCUGCACCUUGGGUUUUCCCUCAGGAGAUAUCUUUUGGGCUGCAU__AUUAA_AAAUA__GGGGUUACCAAAACUG_GUGAAGAAG
((((....)))).(((((((.......(((....))).((((((....))))))))))))).......................................... (-18.64 = -19.45 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:25 2006