Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,877,994 – 9,878,085 |
Length | 91 |
Max. P | 0.947927 |
Location | 9,877,994 – 9,878,085 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.53 |
Mean single sequence MFE | -35.48 |
Consensus MFE | -30.39 |
Energy contribution | -29.67 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.86 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9877994 91 - 20766785 CUAAGAAGCAUCUUCGGCUGGCGGAAAAGUGCCGCCUGGUGUUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG ....((.((..(....).(((.(((((((((.((((.(((((..(((.....)))..))))))))).))))))))))))....))..)).. ( -39.20) >DroSec_CAF1 1258 91 - 1 CUGAGAAGGAUCUUCGGCUGUCGGAAAAGUGCCGCCUGGUAUACGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG ..((((....))))(((((((.(((((((((.((((.((..((.(((.....))).))..)))))).))))))))).......))))))). ( -34.60) >DroSim_CAF1 1203 91 - 1 CUGAGAAGCAUUUUCGGCUGUUGGAAAAGUGCCGCCUGGUAUAUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG ..............(((((((.(((((((((.((((.((..((.(((.....))).))..)))))).))))))))).......))))))). ( -34.30) >DroEre_CAF1 5365 91 - 1 CUGAGAAGCAUCUUUGGCUGGCGGAAAAGUGCCGCCUGGUAAUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUGGCGGUCGA .......(.(((.(..(.(((.(((((((((.((((.(((....(((.....)))....))))))).)))))))))))).)..).)))).. ( -33.20) >DroYak_CAF1 1173 91 - 1 CUGAGAAGCAUCUUUGGCUGGCGGAAAAGUGCCGCCUGGUAUUUGCGUAAGUCGUCUGUGCCGGCGAUACUUUUCCCCAUUUGGCGGUCGG .......(.(((.(..(.(((.(((((((((.((((.(((((..(((.....)))..))))))))).)))))))))))).)..).)))).. ( -36.10) >consensus CUGAGAAGCAUCUUCGGCUGGCGGAAAAGUGCCGCCUGGUAUUUGCGUAUGUCGCCUGCGCCGGCGAUACUUUUCCCCAUUUCGCGGUCGG .............(((((((.((((((((((.((((.(((....(((.....)))....))))))).))))))))).......)))))))) (-30.39 = -29.67 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:24 2006