Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,693,779 – 1,693,894 |
Length | 115 |
Max. P | 0.556118 |
Location | 1,693,779 – 1,693,894 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 73.02 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -4.44 |
Energy contribution | -7.18 |
Covariance contribution | 2.74 |
Combinations/Pair | 1.19 |
Mean z-score | -1.59 |
Structure conservation index | 0.22 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.556118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1693779 115 + 20766785 AUGCAAUAAAUAUCAAACAUUAAGCUUAAAUUGUAGUUUACCGCUUAAAAUUUGUGAAAAAUGUGUCUGGUGGUGGUACUUACGUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU ............((.....((((((.(((((....)))))..))))))((((((.((....((((.((((((((((........))).)))))))))))))))))))..)).... ( -24.60) >DroSec_CAF1 79227 99 + 1 AUACAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUAUCGAUUAGAAUUU----------------AUCGAUUUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGGAUAU ................................(((((..((((((........----------------))))))..)).)))...((((.((((..........)))))))).. ( -13.80) >DroSim_CAF1 76950 114 + 1 AUACAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUACCGAUUAAAAUUG-UGAAUAAUGUGACUGGUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGGAUAU .((((((....(((......((((((........))))))..)))....))))-))......(((.(((((((((((......)))).))))))))))((((.......)))).. ( -24.90) >DroEre_CAF1 84497 107 + 1 AUGCAAUAAAUAUAAAGUGUUAGGCUUAAUUCAAAGUUUACCGAUAAGAAUUG--------GUGAAUAGUUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU ....................((..(((((((....((((((((((....))))--------)))))).((((((((............)))))))).......)))))))..)). ( -24.20) >DroYak_CAF1 5207 87 + 1 AUGCAGUAAAUAUCAAAUAU--------------ACUU------UGAGAAUAA--------UUGGACUGAUGGUAGUACUUACAUCAUCCAUCAGUGCAUCCAAAUUAAGAAUAU ((((........(((((...--------------..))------)))......--------....((((((((...............))))))))))))............... ( -15.36) >consensus AUGCAAUAAAUAUCAAAUAUUAAGCUUAAUUCGUAGUUUACCGAUUAGAAUUG________UGGGACUGAUGGUGGUACUUACAUCAUCCAUCAGCGCAUCCAAAUUGAGAAUAU ((((................((((((........))))))..........................(((((((((((......)))).))))))).))))............... ( -4.44 = -7.18 + 2.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:33 2006