Locus 2859

Sequence ID 2R_DroMel_CAF1
Location 9,873,954 – 9,874,059
Length 105
Max. P 0.572462
window4729

overview

Window 9

Location 9,873,954 – 9,874,059
Length 105
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 78.30
Mean single sequence MFE -23.44
Consensus MFE -16.56
Energy contribution -17.32
Covariance contribution 0.76
Combinations/Pair 1.19
Mean z-score -1.42
Structure conservation index 0.71
SVM decision value 0.08
SVM RNA-class probability 0.572462
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9873954 105 - 20766785
AGCUUCUGAAAUCCACAA-------AUCCACGCUGU-UUGUAUUGCUAUUCGCAAUGCCUCGAAAACGGCUCUAUUUUCAUAUA--AUUUCACGCCGACUUGCGGCUACU-UUGGC
.(((..((((((......-------......(((((-(((((((((.....))))))).....)))))))..(((......)))--)))))).((((.....))))....-..))) ( -22.90)
>DroSec_CAF1 6579 105 - 1
AGCAUCUGAAGUCCACAA-------AUCCACGCUGU-UUGUAUUGCUCUUCGCAAUGACUCGAAAACGGCUCUAUUUUCAUAAU--AUUUCACGCCGACUUGCGGCUAAU-UUGGC
...............(((-------((....(((((-((.((((((.....))))))......)))))))..............--.......((((.....))))..))-))).. ( -21.20)
>DroSim_CAF1 6510 105 - 1
AGCAUCUGAAAUCCCCAA-------AUUCACGCUGU-UUGUAUUGCUCUUCGCAAUGCCUCGAAAACGGCUCUAUUUUCAUAAU--AUUUCACGCCGACUUGCGGCUAUU-UUGGC
..............((((-------(.....(((((-(((((((((.....))))))).....)))))))..............--.......((((.....))))...)-)))). ( -24.60)
>DroYak_CAF1 6373 107 - 1
AGCAUCUGAAACCCAUAAA------ACCCACGCUGUUUUGUAUUGCUCUUCGCAAUGCCUCGAAAACGGCUCUAUUUUCAUAAU--AUUUCACGCCGACGUGCGGCUAUU-UUGGC
............(((....------......(((((((((((((((.....)))))))....))))))))..............--.......((((.....))))....-.))). ( -24.10)
>DroAna_CAF1 6197 105 - 1
AGCGUCUG---CCCACAAAAUCAAAUUCCACGCCGA-UUCCAUCAUAGCUUCCAGU-----GGAAACGGCUUCACC--CAAAAUCACUUUCACGCCGCCAUGCGGCUUUUCUUGGC
.......(---((..................((((.-((((((...........))-----)))).))))......--...............(((((...))))).......))) ( -24.40)
>consensus
AGCAUCUGAAAUCCACAA_______AUCCACGCUGU_UUGUAUUGCUCUUCGCAAUGCCUCGAAAACGGCUCUAUUUUCAUAAU__AUUUCACGCCGACUUGCGGCUAUU_UUGGC
...........................(((.(((((.(((((((((.....)))))))....)).))))).......................((((.....))))......))). (-16.56 = -17.32 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:20 2006