Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,873,303 – 9,873,420 |
Length | 117 |
Max. P | 0.500000 |
Location | 9,873,303 – 9,873,420 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.48 |
Mean single sequence MFE | -41.10 |
Consensus MFE | -29.26 |
Energy contribution | -27.95 |
Covariance contribution | -1.31 |
Combinations/Pair | 1.28 |
Mean z-score | -1.39 |
Structure conservation index | 0.71 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9873303 117 - 20766785 GGCUUCGGCUGCUU-CCGGUUUCCGGUG-UCGCAACCCUUCGCGAUGUCCCCCGUGCGAGUGGAGCUACAGUGGGCGUGAGCCGGGCAAAACCUAAAUUUC-UUCGGAGAUUUAAAAAAC (((....)))....-..((((((((((.-((((..((.(((((.(((.....)))))))).)).(((......)))))))))))))...))))((((((((-....))))))))...... ( -41.90) >DroSec_CAF1 5927 117 - 1 GGCUUCGGCUGCUU-CCGGUUUCCGGUG-UCGCAACCCUUCGCGUUGUCCCCCGUGCGAGUGGAGCUACAGUGGGCGUGAACCGGGCAAAACCUAAAUUUC-UUCGGAAAUUUAAAAAAC (((....)))....-..((((((((((.-((((..((.((((((..(....)..)))))).)).(((......)))))))))))))...))))((((((((-....))))))))...... ( -41.40) >DroYak_CAF1 5717 116 - 1 GGUUUCGGCUGCUU-CCGGUUUCCGGUG-UCGCAACCCUUCGCGAUGUCCCACGUGCGAGUGGAGCUACAGUGGGCGUGAACCGGGCAAAACCUAAAUUUC-UUCGGAAAUUUAAAAA-C (((((....(((..-((((((..(((..-((((........))))..)(((((((((.......)).)).)))))))..))))))))))))))((((((((-....))))))))....-. ( -43.30) >DroAna_CAF1 5515 120 - 1 GGCCUCGGUCUCGAACUGUUUUUGGGUGUUCGGAACCCUUUGAAAUGUCUCUGGUGCGAGUGGAGCUACAGGGGGCGUGAACCGGGCAAAAAUUAAAUUUCCUACGGAAAUUUAAAAAAC .(((.((((.(((....(((((.((((.......))))...)))))((((((.((((.......)).)).)))))).)))))))))).....((((((((((...))))))))))..... ( -37.80) >consensus GGCUUCGGCUGCUU_CCGGUUUCCGGUG_UCGCAACCCUUCGCGAUGUCCCCCGUGCGAGUGGAGCUACAGUGGGCGUGAACCGGGCAAAACCUAAAUUUC_UUCGGAAAUUUAAAAAAC (((....))).......((((((((((..((((..((.((((((..........)))))).)).(((......))))))))))))...)))))((((((((.....))))))))...... (-29.26 = -27.95 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:17 2006