| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,873,202 – 9,873,300 |
| Length | 98 |
| Max. P | 0.996873 |
| Location | 9,873,202 – 9,873,300 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Mean single sequence MFE | -29.64 |
| Consensus MFE | -18.48 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9873202 98 + 20766785 A-GAGACAGUUUUGGCGUGCCAACCGCACGGAUGGCGAAUCGUUAGCCAUCGUAGUGCUAUGUGGGUUCGAAUUGUUUUGACAAA--AGUCAAA---AAA---UUUG .-((((((((((..((.(((.....((((.((((((.........))))))...))))...))).))..))))))))))(((...--.)))...---...---.... ( -30.00) >DroSec_CAF1 5826 98 + 1 A-GAGACAGUUUUAGCGUGCCAACCGCACGAAUGGCGAAUCGUUAGCCAUCGUAGUGCUAUGUGAGUUCGAAUUGUCUUGACAAA--AGUCAAA---AAA---UUUG .-((((((((((.(((..((....(((((((.((((.........)))))))).)))....))..))).))))))))))(((...--.)))...---...---.... ( -28.40) >DroWil_CAF1 6762 92 + 1 -------AGCUUUAGCGUGCCAACCGCACGAAUGGCGUUUCGUGAGCCAUCGUAGUGCGAUGUUAG-ACGAGCAUUUUUGACAAA-AAGUCAAAUAAAAA---U--- -------.(((....(((((.....)))))...)))(((.(((.(((.((((.....)))))))..-))))))...((((((...-..))))))......---.--- ( -25.80) >DroYak_CAF1 5620 94 + 1 A-GAGACAAU-UUGGCGUGCCAACCGCACGGAUGGCGAAUCGUUAGCCAUCGUAGUGCUAUGUGG---CCGAUUCUUAUGACAAAAAAGUCAA-----AA---UUGG .-....((((-((..((.((((...((((.((((((.........))))))...))))....)))---))).......((((......)))))-----))---))). ( -30.90) >DroAna_CAF1 5413 99 + 1 AUGGGACAAU-UUGACGUGCCAACCGCACGGAUGGCGUUUCAGGAGCCAUCGUAGUGCCGUGUGUA-ACGAUUAAUUUUGACAA---AGUCAAA---AAUUGGUUGG ((((.((...-....(((((.....)))))((((((.........))))))...)).)))).....-.((((((((((((((..---.))).))---))))))))). ( -33.10) >consensus A_GAGACAGUUUUGGCGUGCCAACCGCACGGAUGGCGAAUCGUUAGCCAUCGUAGUGCUAUGUGAG_ACGAAUUGUUUUGACAAA__AGUCAAA___AAA___UUGG ............((((((((.....)))).((((((.........)))))).....)))).................(((((......))))).............. (-18.48 = -19.08 + 0.60)
| Location | 9,873,202 – 9,873,300 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 76.26 |
| Mean single sequence MFE | -25.96 |
| Consensus MFE | -20.52 |
| Energy contribution | -20.16 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.79 |
| SVM decision value | 2.76 |
| SVM RNA-class probability | 0.996873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9873202 98 - 20766785 CAAA---UUU---UUUGACU--UUUGUCAAAACAAUUCGAACCCACAUAGCACUACGAUGGCUAACGAUUCGCCAUCCGUGCGGUUGGCACGCCAAAACUGUCUC-U ....---..(---((((((.--...))))))).....((..((.((...((((...((((((.........)))))).)))).)).))..)).............-. ( -23.90) >DroSec_CAF1 5826 98 - 1 CAAA---UUU---UUUGACU--UUUGUCAAGACAAUUCGAACUCACAUAGCACUACGAUGGCUAACGAUUCGCCAUUCGUGCGGUUGGCACGCUAAAACUGUCUC-U ....---...---.(((((.--...)))))((((....(....)...((((.....((((((.........)))))).((((.....))))))))....))))..-. ( -23.50) >DroWil_CAF1 6762 92 - 1 ---A---UUUUUAUUUGACUU-UUUGUCAAAAAUGCUCGU-CUAACAUCGCACUACGAUGGCUCACGAAACGCCAUUCGUGCGGUUGGCACGCUAAAGCU------- ---.---......((((((..-...))))))...((((((-(((((..(((((...((((((.........)))))).)))))))))).)))....))).------- ( -27.60) >DroYak_CAF1 5620 94 - 1 CCAA---UU-----UUGACUUUUUUGUCAUAAGAAUCGG---CCACAUAGCACUACGAUGGCUAACGAUUCGCCAUCCGUGCGGUUGGCACGCCAA-AUUGUCUC-U .(((---((-----(((((......)))).......(((---((((...((((...((((((.........)))))).)))).).)))).))..))-))))....-. ( -27.10) >DroAna_CAF1 5413 99 - 1 CCAACCAAUU---UUUGACU---UUGUCAAAAUUAAUCGU-UACACACGGCACUACGAUGGCUCCUGAAACGCCAUCCGUGCGGUUGGCACGUCAA-AUUGUCCCAU ((((((...(---((((((.---..))))))).....(((-.....)))((((...((((((.........)))))).))))))))))........-.......... ( -27.70) >consensus CAAA___UUU___UUUGACU__UUUGUCAAAACAAUUCGA_CCCACAUAGCACUACGAUGGCUAACGAUUCGCCAUCCGUGCGGUUGGCACGCCAAAACUGUCUC_U .............((((((......))))))..................((((...((((((.........)))))).))))..((((....))))........... (-20.52 = -20.16 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:16 2006