Locus 2854

Sequence ID 2R_DroMel_CAF1
Location 9,849,193 – 9,849,286
Length 93
Max. P 0.577592
window4720

overview

Window 0

Location 9,849,193 – 9,849,286
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -32.00
Consensus MFE -21.51
Energy contribution -22.57
Covariance contribution 1.06
Combinations/Pair 1.19
Mean z-score -1.40
Structure conservation index 0.67
SVM decision value 0.09
SVM RNA-class probability 0.577592
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9849193 93 - 20766785
GUGGUGUCCUCAUUUUAUUACAUCCCUCGGGGGUUGUUG---GCCUUUAUAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAUGAGCC--
((.((((((((........(((.(((....))).))).(---((((....))..))))))))))).)).....(((....((....))...)))..-- ( -31.90)
>DroSec_CAF1 8120 93 - 1
GUGGUGUCCUCAUUUUAUAACAUCCCUGGGGGGUUGUUG---GCCUUUAUAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAUGAGCC--
........((((((......(((((((((((((((((((---.((((..........))))...)))))))).).))))))))))...))))))..-- ( -35.90)
>DroSim_CAF1 8228 93 - 1
GUGGUGUCCUCAUUUUAUUACAUCCCUCGGGGGUUGUUG---GCCUUUAUAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAUGAGCC--
((.((((((((........(((.(((....))).))).(---((((....))..))))))))))).)).....(((....((....))...)))..-- ( -31.90)
>DroEre_CAF1 8460 93 - 1
GUGGUGUCCUCAUUUUAUUA--UCCCUCGGGGGUUGUUG---GCCUUUAUAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAUGAGCCAA
.(((....((((((...(((--(((((.(((((((((((---.((((..........))))...)))))))).).)).))))))))..))))))))). ( -34.40)
>DroYak_CAF1 8401 95 - 1
GUGGUGUCCUCCUUUUAUUACAUCCCUCGGGGGUUGUUG---GCCUCUAGAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAAAAGCGAA
.........(((((((....(((((((.(((((((((((---.((((..........))))...)))))))).).)).)))))))....))))).)). ( -33.40)
>DroPer_CAF1 12636 82 - 1
AUGGUGUCCUCAUUUUCAUGACUCUCCAGAGGGUUGGUACUACGCCAAACAGUCGCUUG-------GCGACCGCUCCUGAGGGUGACGA---------
....((((..(((....)))((((((.((.((((.(((....((((((........)))-------)))))))))))))))))))))).--------- ( -24.50)
>consensus
GUGGUGUCCUCAUUUUAUUACAUCCCUCGGGGGUUGUUG___GCCUUUAUAGUUGCCGGGGAUACGACGACCACUCCUAGGGGUGACCAAUGAGCC__
.(((((....).........(((((((.(((((((((((....((((..........))))...)))))))).).)).)))))))))))......... (-21.51 = -22.57 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:12 2006