Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,842,568 – 9,842,661 |
Length | 93 |
Max. P | 0.619690 |
Location | 9,842,568 – 9,842,661 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.16 |
Mean single sequence MFE | -32.73 |
Consensus MFE | -21.61 |
Energy contribution | -22.34 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.28 |
Mean z-score | -1.35 |
Structure conservation index | 0.66 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9842568 93 - 20766785 UGCAGAUACAGCACGCUCUCGCUAUGAUGACGCUUGGGUGUCGGCACCCGGGAACUGUGGACAAUGCGCUGCGAGGAGGAAACUGCAAU----C------GAA- ....(((...((((((.....((((..(....((((((((....)))))))).)..)))).....))).)))..(.((....)).).))----)------...- ( -30.20) >DroGri_CAF1 26555 98 - 1 UGCAGAUAGAGCACGCUCUCGCUCUGAUGCCGCUUGGGUGUCAGCACCCUGGAGCUGUGCACAAUCAGCUGUGAGGAGGAAACUGCAA-----AACA-AGCAAA ....(((.(.(((((((((.(..((((((((.....))))))))....).))))).)))).).))).(((((..(.((....)).)..-----.)).-)))... ( -34.50) >DroWil_CAF1 2650 100 - 1 UGCAAAUACAGUACACUCUCGCUAUGAUGACGCUUGGGCGUUAGGACACGAGAACUAUGCACAAUGCGCUGCGAGGAGGAAACUGCAAA---AUAAAAUAGAA- (((.....((((....(((((......((((((....)))))).....))))).....((.....)))))).....((....)))))..---...........- ( -23.70) >DroMoj_CAF1 31576 103 - 1 UGCAGAUAGAGCACGCUCUCGCUUUGAUGCCGCUUGGGCGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAGGAGGAAACUGCAAUGGAAAACAGAACAA- .((((...(((((((((((((..((((((((.....))))))))....))))))).))))....))..))))..(.((....)).).................- ( -38.30) >DroAna_CAF1 1952 89 - 1 UGCAGGUAUAGCACACUCUCGCUGUGGUGUCGCUUGGGGGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAUGAGGAAACUGCAA--------------G- (((((.....(((((((((((..(((.((.(.(....).).)).))).)))))).)))))....(((.......))).....))))).--------------.- ( -31.90) >DroPer_CAF1 5330 102 - 1 UGCAGGUAGAGCACGCUCUCGCUGUGGUGUCGCUUCGGGGUCGGCACCCGGGAGCUGUGGACAAUCAGCUGCGAGGAGGAAACUGCAGG-AAACAAAGAACAA- .((((.(.((.((((((((((....(((((((((....)).)))))))))))))).))).....))).))))..(.((....)).).(.-...).........- ( -37.80) >consensus UGCAGAUAGAGCACGCUCUCGCUAUGAUGACGCUUGGGCGUCAGCACCCGGGAGCUGUGCACAAUCAGCUGCGAGGAGGAAACUGCAA_____AA_A_AACAA_ .((((.....(((((((((((...((.((.(((....))).)).))..)))))).)))))........))))..(.((....)).).................. (-21.61 = -22.34 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:08 2006