Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,840,556 – 9,840,667 |
Length | 111 |
Max. P | 0.640663 |
Location | 9,840,556 – 9,840,667 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.20 |
Mean single sequence MFE | -24.72 |
Consensus MFE | -21.68 |
Energy contribution | -21.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.88 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9840556 111 - 20766785 UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAAAAAACAA ....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))............... ( -23.10) >DroSec_CAF1 79665 103 - 1 UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCUAAAAAA--A------A ....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))(((((......)))))....--.------. ( -23.30) >DroSim_CAF1 80979 105 - 1 UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAA------A ....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))........------. ( -23.10) >DroEre_CAF1 82690 105 - 1 UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCACAGCUUGGGCGAAUACCAAAAAAUAAA------G ....((((((.((.((((((..((((((....)).))))))))))..)).))))))..((.(((........)))....))((((.......))))........------. ( -23.10) >DroYak_CAF1 80379 103 - 1 UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCUCGGCCAUAAUUACGGCCAGAGUUUGGGCGAAUACCAAAGAG--AA------A ....((((((.((.((((((..((((((....)).))))))))))..)).)))))).(((((((........))))....(((((.......))))))))--..------. ( -31.00) >consensus UUUAAUCAUUAGUUAUGUGACCGCUGCUGACCGGAUAGCUCACAUUUGCAAAUGAUCCGCAGCCAUAAUUACGGCCAGAGCUUGGGCGAAUACCAAAAAAAAAA______A ....((((((.((.((((((..((((((....)).))))))))))..)).)))))).....(((........)))......((((.......))))............... (-21.68 = -21.88 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:07 2006