Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,693,494 – 1,693,602 |
Length | 108 |
Max. P | 0.695102 |
Location | 1,693,494 – 1,693,602 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.73 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -19.01 |
Energy contribution | -20.40 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.20 |
Mean z-score | -1.62 |
Structure conservation index | 0.64 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1693494 108 + 20766785 UUUGUCCCGAUAAAAUGUUGAGAUCUUUUUCUUU---UUUUUGGUACUCACUUGGCAUCCUGCCUUUUGGUGUCUGCGGUGACGAAAUACACCAACUGAAUGGCCGGAACA ...((.((((.((((....((((....)))).))---)).)))).))..........(((.(((..(((((((...((....))....)))))))......))).)))... ( -27.70) >DroSec_CAF1 78951 99 + 1 UUUGUUCCAAAUAAAUCUGUAGGU---------U---AUCCUGGUACUCACUUGGCAUCCUGCCUUUUGGUGUCUGCGGUGACGAAAUACACCAACUGAAUGGCCGGAACA ..((((((............(((.---------.---..)))(((..(((...(((.....)))..(((((((...((....))....))))))).)))...))))))))) ( -31.60) >DroSim_CAF1 76614 99 + 1 UUUGUUCCGAAUAAAUCUGUAGGU---------U---AUCUUGGUACUCACUUGGCAUCCUGCCUUUUGGUGUCUGCGGUGACGAAAUACACCAACUGAAUGGCCGGAACA ..((((((((.....))....(((---------(---((.(..((........(((.....)))...((((((...((....))....))))))))..))))))))))))) ( -32.00) >DroEre_CAF1 84222 98 + 1 UUGGUG-CCGAAAAAGGCGUAGGU---------C---AUUUCGGUACUCACUUGGCAUCCUGCCUCUUGGUGUCUGCGGUCACGAAAUACACCAACUGAAUGGCCGGAACA ..((((-((((((..(((....))---------)---.)))))))))).........(((.((((((((((((...((....))....)))))))..))..))).)))... ( -32.40) >DroYak_CAF1 4932 98 + 1 UGGUUU-CGAACAAAUGCCUAGAU---------A---AUUUUGGUACUCACUUGGCAUCCUGCCUUUUGGUGUCUGCGGUCACGAAAUACACCAAUUGAAUGGCCGGAACA ..((((-((..((..((((.(((.---------.---..))))))).(((...(((.....)))..(((((((...((....))....))))))).))).))..)))))). ( -26.30) >DroPer_CAF1 104703 102 + 1 UAAUCUCCGAAACAACCUAUGGAU---------UUCCGCCACGGAACUCACUUGGCAUCCUGCCGCUUGGUGUCGGCGGUCACGAAGUAUACCAGCUGUAUGGCCGGCACA ......((((....(((....((.---------(((((...))))).))....(((.....)))....))).))))((((((...(((......)))...))))))..... ( -29.20) >consensus UUUGUUCCGAAAAAAUCUGUAGAU_________U___AUCUUGGUACUCACUUGGCAUCCUGCCUUUUGGUGUCUGCGGUCACGAAAUACACCAACUGAAUGGCCGGAACA ........................................(((((..(((...(((.....)))..(((((((...((....))....))))))).)))...))))).... (-19.01 = -20.40 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:32 2006