Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,838,682 – 9,838,791 |
Length | 109 |
Max. P | 0.578592 |
Location | 9,838,682 – 9,838,791 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.53 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -21.09 |
Energy contribution | -21.70 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.05 |
Mean z-score | -2.20 |
Structure conservation index | 0.80 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9838682 109 + 20766785 CCAAAUGCCGAAA-AAUAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroSec_CAF1 77794 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroSim_CAF1 79084 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroEre_CAF1 80844 109 + 1 CCAAAUGCCGAAA-AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((...-....(((((.....(((((..(.(((...))).)..)))))........)))))(((.....)))..........))))).)))).......----------.... ( -26.62) >DroYak_CAF1 78529 110 + 1 CCAAAUGCCGAAAAAACGGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAGUUCGUGUUAGAGAGCCAAAAUAAUUACGGCAAUUGGGCAGGAA----------AAAA ((((.(((((........((....))..(((((..(.(((...))).)..))))).((((..((((........))))..)))).....))))).)))).......----------.... ( -28.70) >DroAna_CAF1 75179 106 + 1 --AAAAGCAGAAA-AAU-----------AGCAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACACAAUAAUUACGGCAAUUGGCCAAAAAGCAGUAAACAAAAA --...........-...-----------.((....(((((....)).(((((((((......(((.(((((.....)))))))).....)))))))))))).....))............ ( -23.40) >consensus CCAAAUGCCGAAA_AACAGCGAAGGCAAAGUAAAGGGCCCCGUGGGACAGUUGCUGAUUUAAAUUCGUGUUAGAGAGACAAAAUAAUUACGGCAAUUGGGCAGGAA__________AAAA ((((.(((((........((....))..(((((..(.(((...))).)..)))))..................................))))).))))..................... (-21.09 = -21.70 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:57 2006