Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,838,409 – 9,838,519 |
Length | 110 |
Max. P | 0.512942 |
Location | 9,838,409 – 9,838,519 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.89 |
Mean single sequence MFE | -37.12 |
Consensus MFE | -20.26 |
Energy contribution | -21.28 |
Covariance contribution | 1.02 |
Combinations/Pair | 1.18 |
Mean z-score | -2.05 |
Structure conservation index | 0.55 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9838409 110 + 20766785 CACUCCAGCGGAUGGAUCCAGCGUAUCCAACGGAUCCAGCUGUGACCCACUGCACCAGUUUUGGUCUUUGGAUCUGCGGAUCCCGCUUGGGCCUGGG------CUUCAUCUCCAUC-- .......(.((((((((((((.((..(((((((((((.((...((.(((..(.(((......))))..))).)).)))))).))).)))))))))))------.))))))).)...-- ( -39.40) >DroSec_CAF1 77506 112 + 1 CACUCCAGCGGAUGGAUGCAGUGUAUCCAACGGAUCCAGCUGUGACCCACUGCACUAGUUUUGGUCUUUCGAUCUGCUGUUCCCGCUUGUGCCUGGG------CUUCAUCGCCAUCUU (((...(((((.....(((((((..((..((((......))))))..))))))).((((...((((....)))).))))...))))).)))....((------(......)))..... ( -33.70) >DroSim_CAF1 78805 112 + 1 CACUCCAGCGGAUGGAUCCAGCGUAUCCAACGGAUCCAGCUGUGACCCACUGCACCAGUUUUGGUCUUUCGAUCUGCGGUUCCCGCUUGGGCCUGGG------CUUCAUCGCCAUCUU ..(((.(((((..((.((((((..((((...))))...)))).)).))((((((........((((....))))))))))..))))).)))....((------(......)))..... ( -35.40) >DroEre_CAF1 80599 105 + 1 CACUCCAGCGGA----UCC---------AACGGGUCCAGCUGUGACCCACUGCACCAGUUUUGCUCUUUGGAUCCGCGGAUCCCGCUUGGGCCUGGGCCUGGGCUUCAUCUCCAUCUC ...(((.(((((----(((---------((.((((..(((((((........)).)))))..)))).)))))))))))))....(((..(((....)))..))).............. ( -46.30) >DroYak_CAF1 78275 102 + 1 CACUCCAACAGA----UCCAACAUAUCCAACAGAUCCAGCUGUGACCCACUGCACCAGUUUUGGUCUUUGGAUCCGCGGAUCCCACUUGGGUCUGGG------CUUC------AUCUC ........((((----(((((...((((..(.(((((((....((((.((((...))))...)))).))))))).).)))).....)))))))))..------....------..... ( -30.80) >consensus CACUCCAGCGGAUGGAUCCAGCGUAUCCAACGGAUCCAGCUGUGACCCACUGCACCAGUUUUGGUCUUUGGAUCUGCGGAUCCCGCUUGGGCCUGGG______CUUCAUCGCCAUCUC .........((((((...............(((((((((....((((.((((...))))...)))).))))))))).....(((((....))..)))..............)))))). (-20.26 = -21.28 + 1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:56 2006