| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 9,838,110 – 9,838,222 |
| Length | 112 |
| Max. P | 0.779085 |
| Location | 9,838,110 – 9,838,222 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.67 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -19.62 |
| Energy contribution | -19.23 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.779085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9838110 112 + 20766785 ---AAACAAACGAAGAAAUGCUUUCUUAAGUAAUGUGACUAUUAUCCCGCUAGC--UUAGCCAUAGGUUUAGCUGGCGGGUUUCCUC---UUUAUUGAUAUACUUUUAAUGGACUUACAA ---...............(((((....))))).(((((((((((.(((((((((--(.((((...)))).)))))))))).....((---......))........))))))..))))). ( -30.20) >DroSec_CAF1 77202 112 + 1 ---AAGCUAACAAAGAAAUGCUUUCUUAAGUAAUGUGACAAUUAACCCGCUAGC--UUAGCCACAGGUUUUGCUGGCGGGUUUCCUC---UUUAUUGAUAUACUUUUAAUGGACUUACAA ---...............(((((....))))).(((((.....(((((((((((--..((((...))))..))))))))))).....---((((((((.......)))))))).))))). ( -31.70) >DroSim_CAF1 78501 112 + 1 ---AAGCUAACAAAGAAAUGCUUUCUUAAGUAAUGCGACUAUUAACCCGCUAGC--UUAGCCACAGGUUUCGCUGGCGGGCUUCCUC---UUUAUUGAUAUACUUUUAAUGGACUUACAA ---..((..((.(((((.....)))))..))...))..((((((((((((((((--..((((...))))..))))))))).....((---......)).......)))))))........ ( -28.10) >DroEre_CAF1 80300 112 + 1 ---GAACAAACAGAGAAAUGCUUUCUUAAGUAAUGUGACCAUUAUCCCGCUAGC--UUAGCCACAGGUUUUGCUGGCGGGUUUCCUC---UUUAUUGAUAUACUUUUAAUGGACUUACAA ---...............(((((....))))).(((((((((((.(((((((((--..((((...))))..))))))))).....((---......))........))))))..))))). ( -31.90) >DroYak_CAF1 77976 112 + 1 ---GAACAAACAUAGAAAUGCUUUCUUAAGUAAUGUGACUUUUAUCCCGCCAGC--UUAGCCACAGGUUUCGCCGACGGGUUUCCUC---UUUAUUGAUAUACAUUUAAUGGACUUACGU ---...............(((((....)))))((((((.......((((.(.((--..((((...))))..)).).)))).......---((((((((.......)))))))).)))))) ( -19.10) >DroAna_CAF1 74606 118 + 1 GACAAACAAACAAAGCAUU--UUUCUCUAAUUAUACGUCUAUUAUACCCCUAGCCCUUGGCUCUGGGCUUCGUUGGAGGCCUUCCUCUCCUUUAUUGAUAUAAUUUUAAUAGUUUGUCGA (((((((.(((.((((...--..........((((.......)))).((..((((...))))..)))))).)))(((((......)))))..((((((.......))))))))))))).. ( -26.30) >consensus ___AAACAAACAAAGAAAUGCUUUCUUAAGUAAUGUGACUAUUAUCCCGCUAGC__UUAGCCACAGGUUUCGCUGGCGGGUUUCCUC___UUUAUUGAUAUACUUUUAAUGGACUUACAA ..........................(((((..............(((((((((....((((...))))..)))))))))...........(((((((.......))))))))))))... (-19.62 = -19.23 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:55 2006