Locus 2845

Sequence ID 2R_DroMel_CAF1
Location 9,837,581 – 9,837,690
Length 109
Max. P 0.841239
window4700 window4701

overview

Window 0

Location 9,837,581 – 9,837,690
Length 109
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 80.13
Mean single sequence MFE -15.77
Consensus MFE -14.10
Energy contribution -14.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -0.64
Structure conservation index 0.89
SVM decision value 0.15
SVM RNA-class probability 0.609216
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9837581 109 + 20766785
GUCUACUGGAUGCAAGCUGAAGUGAGCUGACUAAUGCCGUACAGUAGAGAUUCUGUAAAAUAAACAUCGA--UAGUAUAAAGUAUACAGUAAAGUAUAUAGCAAUAAAGUA
.(((((((...(((((((......))))......)))....)))))))......................--.........((((((......))))))............ ( -18.00)
>DroSec_CAF1 76702 89 + 1
GUCUACUGGAUGCAAGCUGAAGUGAGCUGACUAAUGCCGUACAGUAGAGAUUCU-GAAAAUAAACAACAAUAUAGUAGGA---------------------AAAUAAAGUA
.(((((((...(((((((......))))......)))....)))))))..((((-(...(((........)))..)))))---------------------.......... ( -15.10)
>DroSim_CAF1 78030 90 + 1
GUCUACUGGAUGCAAGCUGAAGUGAGCUGACUAAUGCCGUACAGUAGAGAUUCUUUAAAAUAAACAACAAAAUAGUAGGA---------------------AAAUAAAGUA
.(((((((...(((((((......))))......)))....)))))))..(((((.....................))))---------------------)......... ( -14.20)
>consensus
GUCUACUGGAUGCAAGCUGAAGUGAGCUGACUAAUGCCGUACAGUAGAGAUUCU_UAAAAUAAACAACAA_AUAGUAGGA_____________________AAAUAAAGUA
.(((((((...(((((((......))))......)))....)))))))............................................................... (-14.10 = -14.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 9,837,581 – 9,837,690
Length 109
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 80.13
Mean single sequence MFE -15.66
Consensus MFE -13.10
Energy contribution -13.10
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.84
SVM decision value 0.75
SVM RNA-class probability 0.841239
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 9837581 109 - 20766785
UACUUUAUUGCUAUAUACUUUACUGUAUACUUUAUACUA--UCGAUGUUUAUUUUACAGAAUCUCUACUGUACGGCAUUAGUCAGCUCACUUCAGCUUGCAUCCAGUAGAC
...(((((((...(((((......)))))..........--..(((((......(((((........))))).(((....)))((((......)))).)))))))))))). ( -17.80)
>DroSec_CAF1 76702 89 - 1
UACUUUAUUU---------------------UCCUACUAUAUUGUUGUUUAUUUUC-AGAAUCUCUACUGUACGGCAUUAGUCAGCUCACUUCAGCUUGCAUCCAGUAGAC
..........---------------------..(((((.((.((((((.......(-((........))).)))))).))((.((((......)))).))....))))).. ( -14.50)
>DroSim_CAF1 78030 90 - 1
UACUUUAUUU---------------------UCCUACUAUUUUGUUGUUUAUUUUAAAGAAUCUCUACUGUACGGCAUUAGUCAGCUCACUUCAGCUUGCAUCCAGUAGAC
..(((((...---------------------....((......)).........)))))....(((((((....(((......((((......)))))))...))))))). ( -14.69)
>consensus
UACUUUAUUU_____________________UCCUACUAU_UUGUUGUUUAUUUUA_AGAAUCUCUACUGUACGGCAUUAGUCAGCUCACUUCAGCUUGCAUCCAGUAGAC
...............................................................(((((((....(((......((((......)))))))...))))))). (-13.10 = -13.10 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:54 2006