Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,837,233 – 9,837,334 |
Length | 101 |
Max. P | 0.839944 |
Location | 9,837,233 – 9,837,334 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.07 |
Mean single sequence MFE | -11.92 |
Consensus MFE | -11.44 |
Energy contribution | -11.84 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.96 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.839944 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9837233 101 + 20766785 AAAACUGAACAAAAAAAAAAAAAAGAAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAAGCCAGGCUGAUCGGAGACACGAAAA ...............................................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.90) >DroSec_CAF1 76360 97 + 1 AAAACUGAACUGAACAAAAAA----AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA .....................----......................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.70) >DroSim_CAF1 77689 96 + 1 AAAACUGAACUGAACAAAA-A----AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA ...................-.----......................(((.(((..(((.(.((((..........)))).).)))))))))......... ( -12.70) >DroEre_CAF1 79589 92 + 1 AAAACCAA----AACAAAA-U----AAAAACAAUUUCACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGCCUGAUCGGAGACACGAAAA ........----.......-.----......................(((.(((..(((...((((..........))))...)))))))))......... ( -10.60) >DroYak_CAF1 77110 91 + 1 AAAACCA-----AACAAAA-U----AAACUCAAUCUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAACGGAGACACGAAAA .......-----.......-.----......................(((.((...(((.(.((((..........)))).).))).)))))......... ( -10.70) >consensus AAAACUGAAC__AACAAAA_A____AAAUACAAUUUUACAAAUUUUCCUCACGAAAUCAUUGUGGCCAAAAUAAAUGCCAGGCUGAUCGGAGACACGAAAA ...............................................(((.(((..(((.(.((((..........)))).).)))))))))......... (-11.44 = -11.84 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:52 2006