Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 9,837,102 – 9,837,195 |
Length | 93 |
Max. P | 0.875615 |
Location | 9,837,102 – 9,837,195 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.13 |
Mean single sequence MFE | -26.02 |
Consensus MFE | -23.02 |
Energy contribution | -22.88 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.04 |
Mean z-score | -1.78 |
Structure conservation index | 0.88 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 9837102 93 - 20766785 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40) >DroSec_CAF1 76229 93 - 1 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAACGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40) >DroSim_CAF1 77558 93 - 1 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAACGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40) >DroEre_CAF1 79459 93 - 1 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG-------------------------GCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((..((((..((((((((((.....))))-------------------------)..--))))).......(((((.......))))).)))))))))... ( -24.40) >DroYak_CAF1 76976 97 - 1 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCACCGGAGAGUUG---------------------GCUGGCC--AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((.....((((((((.....)))))))).---------------------(((.((.--...((.((....))....)).....)).)))...)))))... ( -25.10) >DroAna_CAF1 73938 120 - 1 UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGUGGAGAGUCGAGCCGGAAUCUCCAUCUCCGAGCUGGCCGAAAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((...((((((((((.....))))))))))(((((...(((.......))))))))...........(...(((((.......))))).)...)))))... ( -33.40) >consensus UGGCUUUUAAUGGCCAACACGAAUUUGACUCUUUCCAGCGGAGAGUUG_________________________GCC__AAAGAAAAGAAAUUGCAAUCAAAAUGCGAGCAAACGUGUCAG (((((......)))))(((((.....((((((((.....)))))))).......................................(...(((((.......))))).)...)))))... (-23.02 = -22.88 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:51 2006